#NEXUS [written Thu Dec 10 16:33:17 AKST 2020 by Mesquite version 3.6 (build 917) at SikesPBook-2.local/10.0.1.40] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Lesteva_longoelytrata Lesteva_monticola Lesteva_pallipes Lesteva_pubescens Unamis_columbiensis Phlaeopterus_bakerensis Phlaeopterus_castaneus Phlaeopterus_cavicollis Phlaeopterus_czerskyi Phlaeopterus_elongatus Phlaeopterus_filicornis Phlaeopterus_frosti Phlaeopterus_fusconiger Phlaeopterus_hatchi Phlaeopterus_houkae Phlaeopterus_kavanaughi Phlaeopterus_lagrandeuri Phlaeopterus_loganensis Phlaeopterus_longipennis Phlaeopterus_obsoletus Phlaeopterus_occidentalis Phlaeopterus_olympicus Phlaeopterus_smetanai ; END; BEGIN CHARACTERS; TITLE COI; DIMENSIONS NCHAR=654; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lesteva_longoelytrata ACTCTTTACTTTATCT(A T)TGGTGCTTGAGCAGGAATAGTAGGAACTTCCCTTAGAATACTAATCCGAGCAGAATTAGGAAACCCTGGTTCCCTAATTGGAGATGATCAAATTTATAACGTAATTGTCACAGC(C T)CATGCTTTTGTCATAATTTTCTTTATAGTAATACCTATTGTTATTGGAGGATTTGGGAATTGACTAGTACCCCTTATACTAGGAGCCCCTGATATAGCTTTTCCACGAATAAACAACATAAGATTTTGATTACTACCTCCTTCTTTGACCCT(A G)CTTCTTATAAGAAGAATAGTAGAAAGAGGAGCTGGAACAGGTTGAACTGTATACCCTCCTTTATCCTCAAATATTGCCCATGGAGGGGCTTCAGTAGATTTAGCTATTTTTAGATTGCACTTAGCGGGAATTTCCTCAATTCTAGGAGCAGTTAATTTTATTACAACAGTAATTAACATACGTTCTACAGGAATAACTTTTGACCGAATGCCTTTATTTGTTTGATCAGTAGCCATTACAGCTTTACTTTTATTACTCTCCCTCCCTGTACTAGCAGGAGCTATTACTATACTACTAACAGACCGAAATTTAAATACCTCCTTCTTTGACCCTGCAGGAGGAGGTGACCCAATTTTATACCAACATTTA Lesteva_monticola ACTCTTTACTTTATCTTTGGTGCTTGAGCAGGAATAGTAGGAACTTCCCTTAGAATACTAATCCGAGCAGAGTTAGGAAA(C T)CC(A T)GGTTCCCTAATTGGAGATGATCAAATTTATAACGTAATTGTCACAGC(C T)CATGCTTTTGTAATAATTTTCTTCAT(A G)GTAATACCTAT(C T)GTTATTGGAGGATT(C T)GG(A G)AATTGACTAGTACCCCTTATACTAGGAGCCCCTGACATAGCTTTTCCACGAATAAACAA(C T)ATAAGATTTTG(A G)TTACTCCCTCCTTCTTTGACCCTGCTACTTATAAGAAGAATAGTAGAAAGAGGAGC(A G)GGAACAGGTTGAACTGTTTATCCACCTTTATCCTCAAATATTGCTCATGGAGG(A G)GCTTCAGTAGATTTAGCTATTTTTAGA(C T)TACACCTAGC(C T)GGAATTTCTTCAATTCTAGGGGCAGTCAATTTTATTACAACAGTAATTAATATACGTTCTACAGGAATAACTTTTGA(C T)CGAATACCTTTATTTGTTTGATCAGTAGCTATTACAGCCTTACTCTTATTACTATCCCTTCCTGTACTAGCAGG(A G)GCTATTACTATGCTACTAACAGATCGAAATTTAAATACTTCCTTCTTTGACCCTGC(G T)GGAGGAGGAGA(C T)CC(A G)ATTTTATACCAACATTTA Lesteva_pallipes ACATTATACTTTATCTTTGGGGCTTGAGCTGGAATAGTAGGAACATCCTTAAGAATACTAATCCGAGCAGAATTAGGAAATCCCGGCTCACTAATTGGAGATGACCAAATTTATAATGTTATTGTAACTGCTCATGCTTTTATTATGATTTTTTTTATAGTTATACCTATTGTTATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCTGATATAGCCTTTCCCCGAATAAATAACATAAGATTTTGATTATTACCCCCTTCCTTAACATTACTTTTAATGAGAAGAATAATTGAAAGAGGAGCCGGAACAGGATGAACTGTCTATCCCCCTTTATCTTCAAATATTGCCCATGGGGGAGCTTCTGTTGATTTAGCTATTTTTAGATTACATTTAGCTGGAATTTCTTCAATTCTTGG(A G)GCTGTAAATTTTATTACAACTGTAATTAACATACGATCAACTGGAATATCTTTTGATCGAATACCTTTATTCGTTTGATCTGTCGCAATTACAGCTCTATTATTATTGCTCTCATTACCTGTACTGGC(A T)GGAGCTATCACTATACTTTTAACAGACCGAAATCTAAACACATCATTTTTTGATCCTGCAGGAGGAGGAGACCCTATCTTATACCAACATTTA Lesteva_pubescens ACTCTTTACTTTATCTTTGGGGCTTGAGCTGGAATAGTAGGAACTTCCCTTAGAATACTAATCCGAGCAGAATTAGGGAACCCTGGTTCCCTAATTGGAGATGATCAAATTTATAATGTAATTGTAACGGCCCATGCATTTGTAATAATTTTTTTTATAGTTATACCTATTGTTATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCTGATATGGCTTTTCCTCGAATAAATAACATAAGATTTTGGTTACTCCCCCCTTCACTCACTCTACTTCTTATAAGAAGAATGGTTGAAAGAGGAGCAGGTACTGGTTGAACTGTTTATCCTCCCTTATCATCTAATATTGCCCATGGAGGGGCTTCAGTAGATTTAGCTATTTTTAGTTTACATCTAGCGGGAATTTCATCTATTTTAGGAGCAGTTAATTTTATTACAACAGTAATTAATATACGTTCTACAGGAATAACTTTTGACCGAATACCCTTATTTGTTTGATCTGTAGCTATTACAGCTTTACTCCTATTACTTTCTCTCCCTGTACTAGCTGGGGCTATTACAATATTATTAACAGACCGAAATTTAAACACATCTTTTTTTGACCCAGCAGGAGGAGGGGACCCTATTTTATATCAGCATTTA Unamis_columbiensis ACTTTATATTTTATCTTTGGAGCATGAGCAGGTATAGTAGGAACTTCTTTAAGAATTCTAATTCGTGCAGAATTAGGAAACCCCGGATCATTAATTGGAGATGACCAAATTTATAATGTAATTGTAACAGCTCATGCTTTTGTTATAATTTTTTTTATAGTTATACCCATTATAATTGGAGGATTCGGAAACTGACTAGTACCCCTTATACTAGGAGCTCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGATTATTACCACCATCCTTAACTTTACTTTTAATAAGAAGAATAGTTGAAAGAGGTGCAGGAACTGGATGAACTGTTTACCCTCCCCTTTCATCAAATATTGCTCATGGAGGATCTTCTGTAGATTTAGCAATTTTTAGACTTCATTTAGCCGGAATTTCATCAATTCTTGGTGCTGTAAATTTTATTACAACAGTTATTAATATACGAACAACAGGAATAACATTTGATCGAATACCCTTATTTGTTTGAGCAGTTGCTATTACAGCATTATTATTGCTTCTATCACTTCCTGTTTTAGCAGGAGCTATCACAATATTATTAACTGACCGAAATTTAAATACATCATTTTTTGACCCTGCGGGAGGAGGAGACCCAATTTTATACCAACATCTA Phlaeopterus_bakerensis ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_castaneus AC(C T)CTTTACTTTATTTTTGGTGCTTGGGCCGGAATAGTAG(A G)AACTTCC(G T)T(A T)AGAATCTTAATTCGAGCTGAACTTGGAAA(C T)CCTGGATCATTAATCGGTGATGACCAAATTTA(C T)AATGT(A G)ATTGTTACAGCTCATGCTTTTGTTATAATTTTTTTCATAGTTATGCCCATCATAATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCAGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTATTACCTCCATC(C T)TTAACTTT(A G)TT(A G)CT(A G)ATAAGAAGAATAGTAGAAAGAGGAGCTGGTACTGGTTGAACAGTTTATCC(A G)CCTTTATCTTCAAATATTGCTCATGGAGGATCTTC(A G)GTTGATTTAGCAATTTTTAGTTTACATTTAGCTGGTATTTCATCAATTCTAGGAGCTGTAAATTTTAT(C T)ACAAC(A T)GTTATTAATATACGA(A G)CTGCAGGAATAACTTTTGATCGAATACCCTTATTT(A G)TTTGATCAGTTGCTATTACAGCATTACTTCTTCTTCTTTCTTTACCTGTTTTAGCAGGAGCTATTACAATACT(A T)TTAACAGATCGAAACTTAAATACATCCTTTTTTGA(C T)CCCGCAGGAGGAGGAGACCCAATTTTATA(C T)CAACATCTT Phlaeopterus_cavicollis ACTCTTTATTTTATTTTTGGTGCTTGAGCAGGAAT(A G)GTAGGAACCTCT(C T)TAAGAATCCTAATTCGGGCTGAATTAGGAAATCCTGGTTCTTTAATTGGTGATGACCAAATTTATAATGTAATTGTTACAGCTCATGCTTTTGTCATAATTTTTTTTATAGTTATACCTATTATAATTGGAGGCTTTGGAAATTGACTAGTACCCCTTATACTAGGAGCTCCTGATATAGCATTCCCTCGAATAAATAACATAAGATTTTGATTACTTCC(C T)CCATCTTTAAGTTT(A G)TTG(C T)TAATAAGAAGAATAGTAGAAAGAGG(A G)GCTGG(A C)ACTGGTTGAACAGTATATCC(C T)CCATTATCTTCAAATAT(A T)GCTCATGGAGGATCTTCAGTTGA(A T)TTAGCAATTTTTAGATT(A G)CATTTAGCTGGTATTTCATCAATTCTTGG(A G)GCCGTAAATTTCATTACAACAGTAAT(C T)AA(C T)ATACGAACTGCAGGAATAACTTTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACTGCCCTTCTTCTTCT(C T)CTCTCTTTACCTGTTTTAGCAGGAGC(A T)ATTACAATACTTCTAACAGATCGAAATTTAAATACATCATTTTTTGATCCTGCTGGAGGAGG(A G)GATCCTATTTTATATCAACATCTT Phlaeopterus_czerskyi ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_elongatus ACCCT(C T)TACTTTATTTTTGGTGCATGAGCTGGAATAGTAGGAACTTCATTAAGAATTTTAATTCGAGCTGAATTAGG(C T)AACCCTGGATCTCTAATCGGAGATGATCAAATTTACAATGTAATTGTAACAGCTCATGCTTTCATTATAATTTTTTTTATAGTTATACCTATTGTAATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCAGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTACTACCTCCATCTTTAACTTTACTTTTAATAAGAAGAATAGTAGAAAGAGGAGCTGGAACAGGATGAACAGTTTATCCTCCTTTATCTTCAAATATTGCACATGGAGGATCTTCTGTAGATTTAGCCATTTTTAGTTTACATTTAGCAGGTATTTCTTCTATTTTAGGTGCTGTAAATTTTATTACAACAGTAATTAATATACGAACTACTGGAATAACATTTGATCGAATACCC(C T)TATTTGTTTGATCAGTTGCTATTACTGCTTTATTGCTATTACTATCTTTACCTGTTTTAGCTGGTGCTATCACAATATTATTGACAGATCGAAATTTAAATACATCATTTTTTGATCCAGCAGGTGGAGGAGACCCTATTTTATACCAACACTTA Phlaeopterus_filicornis ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_frosti ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_fusconiger ACTCTTTATTTT(A T)TT(A T)TTGGTGCTTGAGCAGG(A T)ATAGTAGGAACCTCTTTAAGAATCCTAATTCGAGCTGAATTAGGAAA(C T)CC(C T)GGATCTTTAATTGGTGA(G T)GATCAAATTTATAATGTAAT(A T)GTTACAGCTCA(C T)GCTTTTGTCATAATTTTTTTCATAGTTATACCTATTATAATTGGAGGATTTGG(A G)AATTGACTAGTACCCCTTATACTAGGAGCCCCTGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTATTACC(C T)CCTTCTCTAACTTTACTACTTATGAGAAGAATAGTTGAAAGAGGAGCTGGGACTGGTTGAACAGTTTA(C T)CC(A C)CCATTATCTTCAAATATTGCTCATGGAGGGTCTTCAGTAGA(C T)TTAGCAATTTTTAGATTACACTTAGC(A T)GGTATTTCATCAATTCTAGGAGCTGTAAATTTTATCACAACAGTAATTAATATACGAAC(C T)GCAGGAAT(A G)ACTTTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACAGCCCTTCTTCTTCTTCTTTCTTTACCTGTATTAGC(A C T)GG(A G)GCAATTACAATACTTTTAACAGATCGAAATTTAAATACATCATTTTTTGATCCTGCTGGAGGAGGAGA(C T)CCAATTTTATA(C T)CAACA(C T)CTT Phlaeopterus_hatchi ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_houkae ACTCTTTACTTTATTTTTGGGGCTTGAGCTGGAATAGTAGGAACTTCACTAAGAATTTTAATTCGGGCTGAACTTGGTAACCCTGGATCTCTAATCGGAGATGACCAAATTTACAATGTAATTGTAACAGCCCATGCATTTGTAATAATTTTTTTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCTGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTACTCCCTCCCTCTTTAACTTTACTGCTAATAAGAAGAATAGTTGAAAGAGGAGCAGGAACTGGTTGAACAGTTTATCCCCCCTTATCTTCTAATATCGCCCATGGTGGATCTTCCGTAGATCTAGCAATTTTTAGATTACATCTAGCTGGAATCTCATCAATTTTAGGTGCAGTAAATTTTATTACTACAGTAATCAACATACGAACAACTGGAATAACCTTTGATCGAATACCCTTATTTGTTTGATCAGTAGCTATTACTGCTTTACTCCTTTTATTATCTTTACCTGTTTTAGCTGGAGCTATCACTATACTATTAACAGACCGAAATTTAAATACATCATTTTTTGATCCCGCTGGAGGTGGAGACCCAATTTTATA(C T)CAGCATTTA Phlaeopterus_kavanaughi ACCCTTTACTTTATTTTTGGTGCTTGGGCCGGAATAGTAGGAACTTCCTTAAGAATCTTAATTCGAGCCGAACTTGG(A T)AACCCTGGGTCATTAATTGGTGATGACCAAATTTATAATGTAATTGTTACAGCCCATGCTTTTGTTATAATTTTTTTCATAGTTATGCCTATCATAATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCAGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTATTACC(C T)CCATCTTTAACTCTGTTGCTAATAAGAAGAATAGTAGAAAGAGGGGCTGGAACTGGTTGAACAGTTTATCCTCCTTTATCTTCTAATATTGCTCATGGAGGATCTTCTGTTGATTTAGC(C G)ATTTTTAGTTTACATTTAGCTGGAATTTCATCAATTTTAGGAGCTGTAAATTTTATCACAACTGTTATTAATATACGAACTGCAGGAATAACTTTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACAGCATTACTTTTACTACTTTCTTTACCTGTTTTAGCAGGAGCTATTACAATACTTTTAACGGATCGAAATTTAAATACATCATTTTTTGATCCTGCTGGAGGAGGAGATCCAATTTTATATCAACACCTT Phlaeopterus_lagrandeuri ACTCTTTACTTTATTTTTGGTGCTTGAGC(A T)GGAATAGTAGGAACTTCTTTAAGAATTTTAATTCGAGCTGAATTAGGTAATCCTGGCTCCTTGATTGGAGATGATCAAATTTATAATGTAATTGTAACTGCCCATGCTTTCATCATAATTTTTTTTATAGTAATACCAATTATAATTGGAGGATTCGGAAATTGACTAGTACCCCTTATACTAGGAGCTCCCGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTATTACCTCCATCTTTAACATTATTGCTAATAAGAAGAATAGTTGAAAGAGGAGCTGGTACAGGATGAACTGTTTATCCCCCTCTTTCATCAAACATTGCTCATGGTGGATCCTCAGTAGATTTAGCAATTTTTAGATTACATTTAGCAGGAATTTCATCTATTCTAGGAGCTGTAAATTTTATCACTACAGTAATTAATATACGAACCACTGGAATAACATTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACAGCCTTATTACTTTTATTATCGCTACCTGTTTTAGCAGGAGCTATTACAATATTATTGACAGATCGAAATTTAAATACATCATTTTTTGACCCAGCAGGAGGAGGAGATCCAATTTTATACCAACATTTA Phlaeopterus_loganensis ACTCTTTACTTTATTTTTGGTGCTTGGGCCGGAATAGTAGGAACTTCCTTAAGAATCTTAATTCGAGCTGAACTTGGAAATCCTGGATCATTAATCGGTGATGACCAAATTTATAATGTGATTGTTACAGCTCATGCTTTTGTTATAATTTTTTTCATAGTTATGCCCATCATAATTGGAGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCCCCAGATATAGCATTTCCTCGAATAAATAACATAAGATTTTGATTATTACC(C T)CCATCCTTAACTTTATTGCTAATAAGAAGAATAGTAGAAAGAGGAGCTGGTACTGGTTGAACAGTTTATCC(A G)CCTTTATCTTCAAATATTGCTCATGGAGGATCTTCGGTTGATTTAGCAATTTTTAGTTTACATTTAGCTGGTATTTCATCAATTCTAGGAGCTGTAAATTTTATTACAACTGTTATTAATATACGAGCTGCAGGAATAACTTTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACAGCATTACTTCTTCTTCTTTCTTTACCTGTTTTAGCAGGAGCTATTACAATACTATTAACAGATCGAAACTTAAATACATCCTTTTTTGATCCCGCAGGAGGAGGAGACCCAATTTTATA(C T)CAACATCTT Phlaeopterus_longipennis ------TATTTTATTTTTGGTGCTTGAGCAGGAATAGTAGGAACATCCTTAAGAATTTTAATTCGAGCTGAATTAGGAAATCCCGGATCATTAATTGGAGATGATCAAATTTATAATGTAATTGTTACTGCTCATGCTTTTATTATAATTTTCTTCATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTAGTACCCCTTATACTAGGAGCTCCTGATATAGCATTCCCTCGAATAAATAACATAAGATTTTGATTATTACCTCCTTCATTAACTTTGCTACTAATAAGAAGAATAGTTGAAAGAGGAGCTGGTACAGGTTGAACTGTTTACCCACCTTTATCTTCTAACATTGCACATGGAGGATCCTCAGTTGATTTAGCAATTTTTAGATTGCATTTAGCTGGAATTTCCTCAATTTTAGGAGCTGTAAACTTTATTACGACAGTAATTAATATACGAACTGCTGGAATAACTTTTGATCGAATACCCTTATTTGTTTGATCAGTTGCTATTACTGCTTTACTTTTATTACTTTCCCTTCCTGTATTAGCAGGAGCTATTACAATATTATTAACAGACCGAAATTTAAATACCTCGTTTTTTGACCCTGCAGGAGGAGGTGACCCAATTTTATACCAACATTTA Phlaeopterus_obsoletus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_occidentalis ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_olympicus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phlaeopterus_smetanai ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN CHARACTERS; TITLE Morph; DIMENSIONS NCHAR=40; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8"; MATRIX Lesteva_longoelytrata 000000000000000000000000?0?000000000000? Lesteva_monticola 00000000000000?000000000?0?000000000000? Lesteva_pallipes 000000000000000001000000?0?000000000000? Lesteva_pubescens 00000000001000?000000000?0?000000000000? Unamis_columbiensis 00000000011101101011010020?000000010000? Phlaeopterus_bakerensis 11000210102110?2101112010101021011100021 Phlaeopterus_castaneus 10001210102110?2101?120101?1020001100120 Phlaeopterus_cavicollis 11000210102110?2101?12010111021001100020 Phlaeopterus_czerskyi 0000031010?1???0?????10?01?0010002100020 Phlaeopterus_elongatus 10100110101110?11311110020?1001001110020 Phlaeopterus_filicornis 10000210102110?1101?12101111121001100020 Phlaeopterus_frosti 10000210102110?2101?12010111021001101020 Phlaeopterus_fusconiger 10000210102110?2101?12010111021001101020 Phlaeopterus_hatchi 10000210102110?1101?12101111021001110020 Phlaeopterus_houkae 0010012110111011131111002111010001110010 Phlaeopterus_kavanaughi 10001210102110?2101?12010111020001100120 Phlaeopterus_lagrandeuri 00002310101110111?11110001{0 1}1000101110010 Phlaeopterus_loganensis 10000210102110?2101?12010101221001102020 Phlaeopterus_longipennis 00010121101110?1121?11002111000001100010 Phlaeopterus_obsoletus 00010121101110111211110021110?0001100010 Phlaeopterus_occidentalis 11000210102110?2101?12010111021001110020 Phlaeopterus_olympicus 11000210102110?2101?12010101021001100121 Phlaeopterus_smetanai 1100021010211012101?12010111021001110020 ; END; BEGIN SETS; CHARSET one (CHARACTERS = COI) = 1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97 100 103 106 109 112 115 118 121 124 127 130 133 136 139 142 145 148 151 154 157 160 163 166 169 172 175 178 181 184 187 190 193 196 199 202 205 208 211 214 217 220 223 226 229 232 235 238 241 244 247 250 253 256 259 262 265 268 271 274 277 280 283 286 289 292 295 298 301 304 307 310 313 316 319 322 325 328 331 334 337 340 343 346 349 352 355 358 361 364 367 370 373 376 379 382 385 388 391 394 397 400 403 406 409 412 415 418 421 424 427 430 433 436 439 442 445 448 451 454 457 460 463 466 469 472 475 478 481 484 487 490 493 496 499 502 505 508 511 514 517 520 523 526 529 532 535 538 541 544 547 550 553 556 559 562 565 568 571 574 577 580 583 586 589 592 595 598 601 604 607 610 613 616 619 622 625 628 631 634 637 640 643 646 649 652; CHARSET two (CHARACTERS = COI) = 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143 146 149 152 155 158 161 164 167 170 173 176 179 182 185 188 191 194 197 200 203 206 209 212 215 218 221 224 227 230 233 236 239 242 245 248 251 254 257 260 263 266 269 272 275 278 281 284 287 290 293 296 299 302 305 308 311 314 317 320 323 326 329 332 335 338 341 344 347 350 353 356 359 362 365 368 371 374 377 380 383 386 389 392 395 398 401 404 407 410 413 416 419 422 425 428 431 434 437 440 443 446 449 452 455 458 461 464 467 470 473 476 479 482 485 488 491 494 497 500 503 506 509 512 515 518 521 524 527 530 533 536 539 542 545 548 551 554 557 560 563 566 569 572 575 578 581 584 587 590 593 596 599 602 605 608 611 614 617 620 623 626 629 632 635 638 641 644 647 650 653; CHARSET three (CHARACTERS = COI) = 3 6 9 12 15 18 21 24 27 30 33 36 39 42 45 48 51 54 57 60 63 66 69 72 75 78 81 84 87 90 93 96 99 102 105 108 111 114 117 120 123 126 129 132 135 138 141 144 147 150 153 156 159 162 165 168 171 174 177 180 183 186 189 192 195 198 201 204 207 210 213 216 219 222 225 228 231 234 237 240 243 246 249 252 255 258 261 264 267 270 273 276 279 282 285 288 291 294 297 300 303 306 309 312 315 318 321 324 327 330 333 336 339 342 345 348 351 354 357 360 363 366 369 372 375 378 381 384 387 390 393 396 399 402 405 408 411 414 417 420 423 426 429 432 435 438 441 444 447 450 453 456 459 462 465 468 471 474 477 480 483 486 489 492 495 498 501 504 507 510 513 516 519 522 525 528 531 534 537 540 543 546 549 552 555 558 561 564 567 570 573 576 579 582 585 588 591 594 597 600 603 606 609 612 615 618 621 624 627 630 633 636 639 642 645 648 651 654; CHARPARTITION byPos (CHARACTERS = COI) = 1 : 1-652\3, 2 : 2-653\3, 3 : 3-654\3; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = COI) = unord: 1- 654; TYPESET * UNTITLED (CHARACTERS = Morph) = unord: 1- 40; END; BEGIN LABELS; CHARGROUPLABEL 1; CHARGROUPLABEL 2; CHARGROUPLABEL 3; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = COI) = universal: 1- 654; END; Begin mrbayes; set autoclose=yes nowarn=yes; [character sets and partitions] charset morph=1-40; charset COI=41-694; charset COI_3rd = 41-694\3; charset COI_1st = 42-694\3; charset COI_2nd = 43-694\3; partition PartitionFinder = 4:morph, COI_1st, COI_2nd, COI_3rd; set partition=PartitionFinder; lset applyto=(1) coding=variable; lset applyto=(2) nst=6 rates=gamma; lset applyto=(3) nst=6 rates=invgamma; lset applyto=(4) nst=6 rates=gamma; prset applyto=(all) ratepr=variable; unlink statefreq=(all) revmat=(all) shape=(all) pinvar=(all) tratio=(all); showmodel; mcmc ngen = 10000000 samplefreq = 1000 printfreq = 1000 nchains = 4 savebrlens = yes; sump; sumt; end; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = COI) = 'Jukes-Cantor': 1- 654; ProbModelSet * UNTITLED (CHARACTERS = Morph) = 'Mk1 (est.)': 1- 40; END; BEGIN TREES[!'Parameters: Trees obtained from file PhlaeopterusCombined.MrB.tre^n1 trees.']; Title combinedFig4; ID 01764f6dff132; LINK Taxa = Taxa; TRANSLATE [0] 1 Lesteva_longoelytrata, [1] 2 Lesteva_monticola, [2] 3 Lesteva_pallipes, [3] 4 Lesteva_pubescens, [4] 5 Unamis_columbiensis, [5] 6 Phlaeopterus_bakerensis, [6] 7 Phlaeopterus_castaneus, [7] 8 Phlaeopterus_cavicollis, [8] 9 Phlaeopterus_czerskyi, [9] 10 Phlaeopterus_elongatus, [10] 11 Phlaeopterus_filicornis, [11] 12 Phlaeopterus_frosti, [12] 13 Phlaeopterus_fusconiger, [13] 14 Phlaeopterus_hatchi, [14] 15 Phlaeopterus_houkae, [15] 16 Phlaeopterus_kavanaughi, [16] 17 Phlaeopterus_lagrandeuri, [17] 18 Phlaeopterus_loganensis, [18] 19 Phlaeopterus_longipennis, [19] 20 Phlaeopterus_obsoletus, [20] 21 Phlaeopterus_occidentalis, [21] 22 Phlaeopterus_olympicus, [22] 23 Phlaeopterus_smetanai; TREE combinedFig4 = (1:0.02323164,2:0.04557092,((3:0.2092621,(5:0.2197421,((((((6:0.04518696,22:0.04529503):0.07363844,8:0.02098781,(21:0.01870366,23:0.01877444):0.04261993):0.04223737,(12:0.01838943,13:0.01474831):0.03371455):0.04056391,((7:0.00185087,18:0.01244749):0.03596618,16:0.05860291):0.06964449):0.04800757,(11:0.04755508,14:0.04067328):0.1055625):0.1334434,9:0.1394912,(10:0.1484337,15:0.1827519):0.08440847,17:0.1482726,(19:0.02100987,20:0.01760554):0.1553143):0.1254719):0.1887708):0.1098791,4:0.1194728):0.07386979); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1607650397853; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8657040634095750736; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4803247389359782629; mqVersion 360; checksumv 0 3 1228014692 null getNumChars 654 numChars 654 getNumTaxa 23 numTaxa 23 short true bits 15 states 15 sumSquaresStatesOnly 249851.0 sumSquares 249851.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; setID 1 1066278138311949347; mqVersion 360; checksumv 1 3 1597568538 null getNumChars 40 numChars 40 getNumTaxa 23 numTaxa 23 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 3362.0 sumSquares -4.6116860184273853E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1009 641; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8657040634095750736 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01764f6dff132; toggleUseWeights off; endTell; setAssignedID 1005.1607650381580.1109179530593083082; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 909 569; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4803247389359782629 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 909 569; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;