#NEXUS [written Thu Dec 10 16:21:06 AKST 2020 by Mesquite version 3.6 (build 917) at SikesPBook-2.local/10.0.1.40] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Lesteva_longoelytrata Lesteva_monticola Lesteva_pallipes Lesteva_pubescens Unamis_columbiensis Phlaeopterus_czerskyi Phlaeopterus_lagrandeuri Phlaeopterus_elongatus Phlaeopterus_houkae Phlaeopterus_longipennis Phlaeopterus_obsoletus Phlaeopterus_filicornis Phlaeopterus_hatchi Phlaeopterus_kavanaughi Phlaeopterus_castaneus Phlaeopterus_loganensis Phlaeopterus_fusconiger Phlaeopterus_frosti Phlaeopterus_cavicollis Phlaeopterus_bakerensis Phlaeopterus_olympicus Phlaeopterus_occidentalis Phlaeopterus_smetanai ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=40; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8"; CHARSTATELABELS 1 Maximum_size / less_than_5.0_mm greater_than_6_mm, 2 Maximum_size / less_than_7.8_mm greater_than_8.1_mm, 3 Body_length_to_width_ratio / 'wide, length to width ratio under 3 ' 'elongate, length to width ratio greater than 3', 4 Ocelli / present absent, 5 Color_of_elytra / 'dark brown, light brown, or dark reddish brown, to black' with_light_reddish_to_yellowish_brown 'bicolored, part dark to light brown, part yellowish to reddish yellow', 6 Antocellar_foveae_shape / elongate_narrow elongate_wide oval_to_circular reduced, 7 Nuchal_constriction / 'distinct, post-ocular region clearly divided into temple and neck with impression continuing across midline of neck' vague absent, 8 Interantennal_impression / present obsolete, 9 Interfacetal_setae_of_eye / 'present on most of eye (often glabrous in extreme dorsal portion)' 'absent from most of eye (glabrous in dorsal half, reduced in number or glabrous on ventral half)', 10 Shape_of_labrum / 0.3_to_0.5_times_as_long_as_wide less_than_0.3_times_as_long_as_wide, 11 Dorsal_surface_of_labrum / without_micropores with_micropores_limited_to_setose_region 'with micropores across labrum, many posterior to setose region', 12 Minimum_width_of_gula / 'narrow, less than 0.2 times as wide as mentum' 'wide, more than 0.2 times as wide as mentum', 13 Base_of_epipharynx / 'with oblique, parallel rows of fine ridges ' 'smooth, without rows of ridges ', 14 Apical_portion_of_epipharynx / with_spines_extending_to_apical_margin smooth, 15 Center_of_epipharynx / with_many_widely_spaced_large_spines with_many_closely_spaced_small_spines, 16 'Maxillary palpi (length of fourth vs. third palpomere' / apical_palpomere_at_least_3.5_times_as_long_as_third_ apical_palpomere_3_to_2.55_times_as_long_as_third apical_palpomere_less_than_2.47_times_as_long_as_third, 17 Fine_cilia_at_base_of_hypopharynx / in_oblique_rows_ not_in_rows_, 18 Micropits_of_antennae / 'present and with numerous non-protruding papilliform structures' absent_or_reduced_to_tiny_pits_ 'present and with pore-like openings' present_and_with_numerous_protruding_papilliform_structures_, 19 Molar_area_of_mandible / with_fine_parallel_rows_of_short_setae_ with_no_setae_, 20 Prosthecal_fringe_of_mandible / does_not_extend_apicad_of_the_subapical_mandibular_tooth extends_beyond_subapical_mandibular_tooth_, 21 Mesal_margin_of_mandible / 'not curved, angulate, or excavate apicad of the molar area' 'curved, angulate, or excavate apicad of the molar area ', 22 Lateral_area_of_pronotum / 'with no, or only trace of impression ' moderately_impressed_ 'deeply impressed, foveiform ', 23 Base_of_pronotal_disk / without_pair_of_transverse_shallow_impressions_ 'with pair of transverse shallow, sometimes confluent, impressions ', 24 Pronotal_width_to_head_width / less_than_1.5 more_than_1.55, 25 Pronotal_lateral_margins_posterior_to_lateral_impressions / not_deflexed_ deflexed_posterior_to_deeply_impressed_lateral_impressions_ deflexed_posterior_to_obsolete_or_vaguely_impressed_lateral_impressions_, 26 Anterior_ridge_of_mesoventrite / with_no_projection_or_only_a_small_median_posterior_lobe prolonged_posteriorly_into_a_long_projecting_median_tooth, 27 Second_tooth_posterior_to_first_on_midline_of_mesoventrite / absent present, 28 Mesoventral_carina / present_along_midline_ vague_or_absent_, 29 Apical_margin_of_elytra / convex_or_subtruncate prolonged_at_suture_in_females_ prolonged_at_suture_in_both_sexes_, 30 Metathoracic_wings / fully_developed_in_all_examined_individuals reduced_or_absent_in_all_examined_individuals fully_developed_in_most_individuals_but_reduced_in_some, 31 Glabrous_portion_of_mesotibia / absent present, 32 Apical_tooth_on_metatrochanter / absent present, 33 Humeral_angles_of_elytra / 'convex, epipleural carina not projecting ' 'more rectangular, epipleural carina projecting and explanate ', 34 'Shape of wing-folding spicule patches on tergite 5' / round_and_widely_separated broadly_oval_and_narrowly_separated_or_so_close_as_to_appear_combined_into_a_single_transverse_band_ absent, 35 First_metatarsomere / shorter_than_ultimate_tarsomere subequal_to_or_longer_than_ultimate_tarsomere, 36 Paramere_length_to_median_lobe_length_ratio / 1.16_and_less_ 1.19_and_greater_, 37 'Internal sac shape (inverted)' / not_rectangular_ rectangular_wide rectangular_elongate_, 38 Carina_of_median_lobe_apex / absent present, 39 Internal_sac_spinature / few_to_no_microspinules sclerites_and_many_sparse_microspinules covered_with_microspinules, 40 Internal_sac_microspinule_pattern / not_denser_basally denser_basally ; MATRIX Lesteva_longoelytrata 000000000000000000000000?0?000000000000? Lesteva_monticola 00000000000000?000000000?0?000000000000? Lesteva_pallipes 000000000000000001000000?0?000000000000? Lesteva_pubescens 00000000001000?000000000?0?000000000000? Unamis_columbiensis 00000000011101101011010020?000000010000? Phlaeopterus_czerskyi 0000031010?1???0?????10?01?0010002100020 Phlaeopterus_lagrandeuri 00002310101110111?11110001{0 1}1000101110010 Phlaeopterus_elongatus 10100110101110?11311110020?1001001110020 Phlaeopterus_houkae 0010012110111011131111002111010001110010 Phlaeopterus_longipennis 00010121101110?1121?11002111000001100010 Phlaeopterus_obsoletus 00010121101110111211110021110?0001100010 Phlaeopterus_filicornis 10000210102110?1101?12101111121001100020 Phlaeopterus_hatchi 10000210102110?1101?12101111021001110020 Phlaeopterus_kavanaughi 10001210102110?2101?12010111020001100120 Phlaeopterus_castaneus 10001210102110?2101?120101?1020001100120 Phlaeopterus_loganensis 10000210102110?2101?12010101221001102020 Phlaeopterus_fusconiger 10000210102110?2101?12010111021001101020 Phlaeopterus_frosti 10000210102110?2101?12010111021001101020 Phlaeopterus_cavicollis 11000210102110?2101?12010111021001100020 Phlaeopterus_bakerensis 11000210102110?2101112010101021011100021 Phlaeopterus_olympicus 11000210102110?2101?12010101021001100121 Phlaeopterus_occidentalis 11000210102110?2101?12010111021001110020 Phlaeopterus_smetanai 1100021010211012101?12010111021001110020 ; END; Begin mrbayes; set autoclose = yes nowarn = yes; charset morph = 1 -35; partition morph = 1 : morph; set partition = morph; lset applyto = ( 1 ) coding = variable; prset applyto = ( all ) ratepr = variable; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ) tratio = ( all ); showmodel; mcmc ngen = 10000000 samplefreq = 1000 printfreq = 1000 nchains = 4 savebrlens = yes; sump; sumt; END; BEGIN ASSUMPTIONS; USERTYPE Stepmatrix (Stepmatrix) = 2 0 1 0.0 1 1 0.0 ; TYPESET * UNTITLED = unord: 1- 40; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 40; END; BEGIN NOTES; TEXT CHARACTER = 15 TEXT = 'new character not from Campbell ms & need SEM of epipharynx to score, thus most taxa are missing data'; TEXT TAXON = 5 CHARACTER = 18 TEXT = state_0_assumed_based_on_Campbell_ms; TEXT TAXON = 12 CHARACTER = 18 TEXT = 'this coding and all other large bodied Phlaeopterus (except. P. elongatus) are assumed to have state 0 based on Campbell''s ms but he didn''t state this explicitly, only implied. Need SEM to confirm.'; TEXT CHARACTER = 20 TEXT = 'new character not in Campbell ms (first noted by Thayer)'; TEXT TAXON = 6 CHARACTER = 27 TEXT = 'the 2 czerskyi specimens differ slightly in this - one has a vague 2nd tooth, the other does not, chose to code as missing/inapplicable'; TEXT TAXON = 7 CHARACTER = 27 TEXT = 'checked a good series and some have a small 2nd tooth and others don''t'; TEXT TAXON = 15 CHARACTER = 27 TEXT = 'seems vaguely present on castaneus, chose to code as missing rather than create 3rd state or miscode'; TEXT TAXON = 11 CHARACTER = 30 TEXT = 'Campbell described obsoletus as having both states but didn''t specify which was more common, thus I coded as missing'; TEXT TAXON = 23 CHARACTER = 31 TEXT = a_minority_of_smetanai_specimens_do_not_have_the_glabrous_apex; TEXT CHARACTER = 36 TEXT = Campbell_ms_implies_outgroups_would_have_ratios_under_1.16; TEXT CHARACTER = 39 TEXT = Campbell_ms_indicates_outgroups_have_state_0; END; BEGIN TREES[!'Parameters: Trees obtained from file PhlaeopterusMorph.MrB.tre^n1 trees.']; Title morphologyFig6; ID 01764f6257cd3; LINK Taxa = Taxa; TRANSLATE [0] 1 Lesteva_longoelytrata, [1] 2 Lesteva_monticola, [2] 3 Lesteva_pallipes, [3] 4 Lesteva_pubescens, [4] 5 Unamis_columbiensis, [5] 6 Phlaeopterus_czerskyi, [6] 7 Phlaeopterus_lagrandeuri, [7] 8 Phlaeopterus_elongatus, [8] 9 Phlaeopterus_houkae, [9] 10 Phlaeopterus_longipennis, [10] 11 Phlaeopterus_obsoletus, [11] 12 Phlaeopterus_filicornis, [12] 13 Phlaeopterus_hatchi, [13] 14 Phlaeopterus_kavanaughi, [14] 15 Phlaeopterus_castaneus, [15] 16 Phlaeopterus_loganensis, [16] 17 Phlaeopterus_fusconiger, [17] 18 Phlaeopterus_frosti, [18] 19 Phlaeopterus_cavicollis, [19] 20 Phlaeopterus_bakerensis, [20] 21 Phlaeopterus_olympicus, [21] 22 Phlaeopterus_occidentalis, [22] 23 Phlaeopterus_smetanai; TREE morphologyFig6 = (1:0.01625692,2:0.01616136,3:0.03973803,(4:0.02217373,(5:0.05811737,(((((20:0.0402422,21:0.03969574):0.06316113,(15:0.01658869,14:0.01637061):0.08575493,19:0.01764114,(18:0.01633499,17:0.01674739):0.03532993,16:0.08330757,(22:0.01681914,23:0.01672328):0.03748369):0.08116127,(12:0.04606086,13:0.0301106):0.07796104):0.1858417,(8:0.09924861,(9:0.05286224,(10:0.0167946,11:0.0159145):0.08921091):0.08103745):0.09662852,7:0.08464809):0.1282359,6:0.07533378):0.256875):0.199611):0.04146148); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1607649666420; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5606927779085504; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4680678256039345191; mqVersion 360; checksumv 0 3 403743954 null getNumChars 40 numChars 40 getNumTaxa 23 numTaxa 23 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 3362.0 sumSquares -4.6116860184273853E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1106 670; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5606927779085504 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01764f6257cd3; toggleUseWeights off; endTell; setAssignedID 992.1607649634763.8875311622672986791; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1006 598; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4680678256039345191 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1006 598; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;