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Corresponding author: Thomas Schmitt ( thomas.schmitt@senckenberg.de ) Academic editor: Steffen Pauls
© 2024 Valentine Mewis, Peter Neu, Thomas Schmitt.
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The understanding of cryptic species complexes with their often highly interesting biogeographical patterns is still a crucial aspect in evolutionary biology and related disciplines. Trichoptera are a group of insects particularly rich in unresolved groups. One example is the Wormaldia occipitalis species complex in which morphological studies suggest remarkable patterns of differentiation. In order to determine genetic differentiation and phylogenetic structure, one mitochondrial (COI) and two nuclear markers (CAD, wingless) were analysed for the W. occipitalis species complex around the Alps and northwards to Germany. The morphology-defined differentiation pattern was also observed at the genetic level. The morphologically well distinguishable groups W. occipitalis and W. subterranea were identified as two genetically distant monophyletic groups with about 10 % genetic divergence of the mitochondrial marker. These two taxa likely split during the Mio-Pliocene transition. Genetic analyses revealed four subgroups within W. occipitalis and three within W. subterranea. Several possible postglacial dispersal and differentiation processes are proposed. Thereby, W. occipitalis from the western Alps and individuals of W. subterranea from the eastern Alps spread towards Central Europe after the Last Glacial Maximum. Today, both species groups are sympatric and partly syntopic in the recolonised area in western Germany but apparently allopatric in their centres of origin around the Alps. The high genetic differentiation, lack of detectable genetic evidence for hybridisation, their syntopic distribution and the morphological distinctness indicate that W. occipitalis and W. subterranea are two distinct species. The genetically determined subgroups might represent subspecies.
Alps, caddisflies, extra-Mediterranean refugia, Last Glacial Maximum, mid-Pleistocene Transition, range dynamics, speciation
Since their formation in the Cretaceous and Cenozoic (
Genetic diversity within species is usually higher in populations that presently exist in the area of former refugia than in populations that occupy areas colonised during postglacial expansion (
High intraspecific diversity and differentiation are also assumed within the trichopteran Wormaldia occipitalis (
So far, only the male individuals of the W. occipitalis species complex can be differentiated morphologically; this is not yet possible for females and larvae. The two species groups W. occipitalis and W. subterranea can be differentiated in the male genitalia by the shape of tergite VIII and segment X, the shape of the upper appendages of segment IX and the spines of the aedeagus (Fig.
In addition to these distinct groups, there are also individual groups who display characteristics of both W. occipitalis and W. subterranea (
In this context, we assume that (i) the differentiation within the species complex W. occipitalis also exists at the genetic level and that (ii) the species groups W. occipitalis / subterranea, which behave like parapatric species at the southern margin of the Alps, colonised Central Europe from the western and eastern Alpine edge, respectively. In addition, we hypothesise that (iii) the differentiation of the two taxonomic groups meeting in Central Europe is the strongest in the complex and that the species groups W. occipitalis and W. subterranea are two separated species. To examine the genetic differentiation and phylogeographic structure, two mitochondrial gene fragments (COI5-P, COI3-P) representing one gene (COI) and two nuclear genes (CAD, wingless) were analysed for representatives of the W. occipitalis / subterranea species group. Subsequently, several analyses including a haplotype network and Bayesian analyses were performed to test the above erected hypotheses.
In total, 82 morphologically identified individuals of the W. occipitalis species complex (File S1 [Table S1]) were included in this study. Sequences for all four analysed gene fragments were available for 36 of these samples, mitochondrial information for 39 samples. All samples were collected from 1994 to 2021 in eight European countries (Fig.
Morphological determination of the samples was mostly based on the morphology of the male genitalia. Some females could be determined by the co-caught males. Individuals for which no clear morphological determination to a group could be made were labelled as Wormaldia sp. Only adult individuals were included for this study.
DNA was first extracted from the whole body using the E.Z.N.A.® Tissue DNA Kit (Omega Bio-tek) following the “DNA Extraction and Purification from Tissue” protocol with minor modifications (File S1 [Table S2]). In later samples, the abdomen was removed prior to extraction because of the potential risk of damaging determination-relevant body parts and the risk of contamination from the digestive system. DNA concentration for all samples was measured with fluorescence using the DeNovix Fluorescence Assay following the DeNovix dsDNA Broad Range protocol (File S1 [Table S1]).
Four gene fragments were amplified: two fragments of the mitochondrial gene cytochrome-c-oxidase subunit I, COI5-P (658 bp) and COI3-P (551 bp), and the nuclear genes wingless (wingless, 473 bp) and nuclear rRNA and carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (CAD, 828 bp). The total volume of each PCR reaction was 15 µL. This contained 7.5 µL of Qiagen Master Mix, 1 µL (COI) to 1.5 µL (wingless and CAD) of primers, 2-4 µL of DNA and made up with water. The amplification of COI5-P was performed with the primers LCO1490 (5´-GGTCAACAAATCATAAAGATATTGG-3´) (
The sequences were edited with GENEIOUS v9.1.8 (
For the phylogenetic analyses, first the number of haplotypes, haplotype and nucleotide diversity as well as segregating sites were calculated using the R-pages ‘pegas’ (
A Maximum Likelihood tree with bootstrap values was reconstructed each for the combined, mitochondrial and nuclear dataset in R using the ‘phangorn’ package (
The combined dataset of the four sequenced fragments had 23 haplotypes with a haplotype diversity of 0.965 and a nucleotide diversity of about 0.025 (File S1 [Tables S3, S4]). 20 of these 23 haplotypes were found in the species group W. occipitalis and three in W. subterranea. In W. occipitalis, haplotype diversity and nucleotide diversity were 0.971 and 0.008, respectively, and in W. subterranea 0.607 and 0.010, respectively. The extended mitochondrial dataset also had 23 haplotypes; haplotype and nucleotide diversity were 0.960 and 0.044, respectively.
Pairwise genetic distances showed two distinct groups within the W. occipitalis species complex (Fig.
Heatmap presenting the pairwise genetic distances of the combined dataset of the Wormaldia occipitalis species complex, including one mitochondrial and two nuclear genes, with dendrogram. The colour codes of the genetic distances are shown in the legend. W. occ. occ. ‒ W. occipitalis occipitalis, W. occ. med. ‒ W. occipitalis meridionalis, W. occ. x sub. ‒ W. occipitalis x subterranea, W. sub. ‒ W. subterranea, W. sp. ‒ W. sp.
Further subgroups were identified within these two groups. The W. subterranea group showed three distinct subgroups with pairwise genetic distances of 0.016 to 0.020 (only mtCOI: 0.030–0.035). Within the W. occipitalis group, four different subgroups were identified with a genetic distance range of 0.007‒0.014 (mtCOI: 0.014‒0.028). These (sub)groups were also detected by PCA (File S1 [Fig. S5]). The first principal component on the x-axis distinguished the two main groups W. occipitalis and W. subterranea. The species’ subgroups are segregated from each other by the second principal component on the y-axis, with three subgroups being differentiated each.
The TCS haplotype network of the mitochondrial gene COI also showed a clear distinction between W. occipitalis and W. subterranea in line with the morphological determination as well as the differentiation of these into multiple subgroups. In this context, the morphologically undefined individuals were clearly genetically assigned (Fig.
TCS haplotype network based on the mitochondrial gene COI of the Wormaldia occipitalis species complex. Mutations from six steps onwards are shown by numbers on the links. Mutational steps up to five steps are not shown. Each morphologically determined group is presented by one colour. The corresponding colour codes are given in the legend.
The Maximum Likelihood analysis of the combined and mitochondrial dataset showed a similar phylogenetic structure of the W. occipitalis species complex (Fig.
Phylogeny of the Wormaldia occipitalis species complex. Species subgroups are marked and labelled with the corresponding name. Individuals are colour-coded by their morphological determination. Blue – W. occipitalis occipitalis, green – W. occipitalis meridionalis, gold – W. occipitalis x subterranea, red – W. subterranea, grey – W. sp. A Maximum likelihood based on the combined dataset (COI, wingless, CAD). Numbers on branches present bootstrap values >70 %. B Bayesian analysis based on the combined dataset (COI, wingless, CAD). Numbers next to the nodes present the node ages in million years.
Using all models recommended by BIC for the genes, Bayesian analysis of the molecular data reached convergence after approximately 3,000,000 generations, with an ESS value of 722 for the posterior and 646 for the prior for the combined dataset. The Bayesian analysis showed a similar phylogenetic structure of the W. occipitalis species complex, with a clear recovery of W. occipitalis and W. subterranea as separate groups that diverged about 5.97 ± 0.01 million years ago (Fig.
No significant Tajima’s D values were determined, neither for the entire complex, nor for its groups or subgroups (File S1 [Table S6]). The mismatch distribution analysis illustrated a multimodal distribution with a total of three maxima (File S1 [Fig. S8]).
The genetic analyses identified two distinct monophyletic groups, W. occipitalis and W. subterranea, and four subgroups within W. occipitalis as well as three in W. subterranea (Figs
Biogeographic hypothesis of the Wormaldia occipitalis species complex. A–D Biogeographic dynamics of the (sub)groups along time. E Recent distribution of the (sub)groups of the W. occipitalis species complex. Individuals are colour-coded by their morphological determination. Blue – W. occipitalis occipitalis, green – W. occipitalis meridionalis, gold – W. occipitalis x subterranea, red – W. subterranea, Grey – W. sp. Genetic groups were also colour-coded and additionally labelled. Light blue – W. occipitalis ssp., pink – W. subterranea ssp.
During the Pliocene, these two groups were not affected by further internal differentiation. From the Pleistocene onwards, we propose several further dispersal processes causing differentiation within both species groups (Fig.
Nevertheless, the data obtained from the molecular clock of the Bayesian analyses must be viewed critically. In contrast to the Maximum Likelihood tree, the Bayesian tree exhibits low node support. Secondly, the substitution rates established for insects were used (
The estimated node ages of the subgroups within both species groups call for multiple peripheral-Alpine extra-Mediterranean refugia (Fig.
This biogeographic hypothesis with a number of extra-Mediterranean refugia is consistent with the phylogeographic pattern of other taxa (
Despite not being significant, the high negative value of Taijma’s D of the W. occipitalis group 1 supports a range expansion for this group (File S1 [Table S6]); recent range expansion is also supported by the star-like haplotype structure of the mtDNA with one common central and several rare satellite haplotypes. The lack of significance of Taijma’s D might result from the limited sample size in our analysis and might have become significant if using a higher number of samples. A similar result was obtained for W. occipitalis group 3, except that Taijma’s D is strongly positive, indicating range regression (
Our genetic analyses (Figs
In contrast to morphology, the genetic analyses revealed four instead of two subgroups within W. occipitalis and additionally a differentiation into three subgroups within W. subterranea (Figs
Geographic proximity partly correlated with genetic differentiation and phylogenetic relatedness of the species’ subgroups: On the one hand, the subgroups of W. occipitalis show an exact order in the haplotype network (Fig.
In short, the taxa W. occipitalis and W. subterranea are distributed in the same area and habitat in western Germany (Fig.
We thank Eva Kleibusch (Senckenberg German Entomological Institute Müncheberg) for practical support in the lab.
File S1
Data type: .pdf
Explanation notes: Figure S1. Differentiation characteristics of the male genitalia of the Wormaldia occipitalis and W. subterranea species group. — Figure S2. Aedeagus spination of the Wormaldia occipitalis (1) and W. subterranea (2) species group. — Figure S3. Phenology of the Wormaldia occipitalis and W. subterranea species group. — Table S1. List of samples with geographic information, sex, collection date, morphological determination, and genetic information. AUT – Austria, BIH – Bosnia and Herzegovina, CHE – Switzerland, DEU – Germany, DNK – Denmark, FRA – France, ITA – Italia, SVN – Slovenia. m – male, f – female, NA – no information. NaN – no measurable. 1 – sequence available, 0 – no sequence available. — Table S2. Modification of the “DNA Extraction and Purification from Tissue” protocol for DNA extraction. — Table S3. Genetic diversity parameter of the two mitochondrial and two nuclear gene fragments as well as the mitochondrial, nuclear and combined dataset of the Wormaldia occipitalis species complex. — Table S4. Genetic diversity parameter of the combined dataset of the Wormaldia occipitalis species complex and species (sub)groups. n – number of haplotypes, h – haplotype diversity, Pi – nucleotide diversity, S – Segregating sites. NaN – no computable. — Figure S4. Heatmap presenting the pairwise genetic distances of the mitochondrial dataset (COI) of the Wormaldia occipitalis species complex, with dendrogram. The colour codes of the genetic distances are shown in the legend. — Table S5. Pairwise genetic distances of the samples of the Wormaldia occipitalis species complex dataset. — Figure S5. Principal Component Analysis of the Wormaldia occipitalis species complex dataset. Individuals are colour-coded by their morphological determination. — Figure S6. Phylogeny of all samples of the Wormaldia occipitalis species complex using Bayesian analysis based on the combined dataset (COI, wingless, CAD). Numbers on branches represent Bayesian posterior probabilities >0.7. Species subgroups are marked and labelled with their corresponding name. Individuals are colour-coded by their morphological determination. Blue – W. occipitalis occipitalis, Green – W. occipitalis meridionalis, Gold – W. occipitalis x subterranea, Red – W. subterranea, Grey – W. sp. — Figure S7. Phylogeny of the Wormaldia occipitalis species complex using Maximum likelihood. A – Based on the mitochondrial dataset (COI). B – Based on the nuclear dataset (wingless, CAD). Numbers on branches present bootstrap values >70%. Individuals are colour-coded by their morphological determination. Blue – W. occipitalis occipitalis, Green – W. occipitalis meridionalis, Gold – W. occipitalis x subterranea, Red – W. subterranea, Grey – W. sp. — Table S6. Tajima’s D and corresponding p-value of the Wormaldia occipitalis species complex, species groups and species subgroups. NaN – no computable. — Figure S8. Mismatch distribution analysis of the mitochondrial dataset of the Wormaldia occipitalis species complex.