Research Article |
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Corresponding author: Zhi-Teng Chen ( chenzhiteng@just.edu.cn ) Academic editor: Michael Schmitt
© 2026 Xu-Hong-Yi Zheng, Yong Qin, Zhi-Teng Chen.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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The genus Hexarthrius Hope, 1842, a prominent member of the family Lucanidae, is widely distributed across southern Asia and includes some of the largest stag beetle species in the world. This study presents the first mitogenomic phylogeny for Hexarthrius and its related genera, using complete mitogenomes from all recognized Hexarthrius species and representatives of all known related genera; 23 mitogenomes are reported here for the first time. We identified two novel mitochondrial gene rearrangements in Hexarthrius and its relative genus Rhaetulus Westwood, 1871, with implications for mitogenome evolution in Lucanidae. Phylogenetic inference and molecular dating recover Hexarthrius as monophyletic and subdivided into two well-supported clades: a Himalayan clade and a Tropical clade, which diverged approximately 8.9 million years ago. Rhaetus Parry, 1864 is inferred as the sister group to Hexarthrius, whereas Rhaetulus occupies a basal position within the larger Hexarthrius clade. Ancestral-area and morphological reconstructions indicate a complex history of vicariance and dispersal associated with uplift of the Hengduan–Himalayan region and subsequent island isolations. These results clarify species relationships, biogeography, and morphological evolution within this emblematic beetle lineage.
gene rearrangement, historical biogeography, mitochondrial genome, molecular phylogeny
Hexarthrius Hope, 1842 is one of the most intriguing genera of Lucanidae found in China and parts of Southeast Asia (
| Species/Subspecies | Distribution |
| Hexarthrius mandibularis Deyrolle, 1881 | Borneo |
| Hexarthrius howdeni de Lisle, 1972 | Philippines |
| Hexarthrius parryi parryi Hope, 1842 | India |
| Hexarthrius parryi paradoxus Möllenkamp, 1898 | Indonesia, Malaysia |
| Hexarthrius parryi elongatus Jordan, 1894 | Borneo |
| Hexarthrius parryi deyrollei Parry, 1864 | China, Cambodia, Laos, Myanmar, Thailand |
| Hexarthrius sanuchi Fukinuki, 2004 | Cambodia |
| Hexarthrius buquetti (Hope, 1843) | Indonesia |
| Hexarthrius nigritus Lacroix, 1990 | Thailand |
| Hexarthrius rhinoceros rhinoceros (Olivier, 1789) | Indonesia |
| Hexarthrius rhinoceros chaudoiri Deyrolle, 1864 | Indonesia |
| Hexarthrius rhinoceros hansi Schenk, 2005 | Indonesia |
| Hexarthrius aduncus aduncus Jordan, 1894 | China, India |
| Hexarthrius aduncus igarashiae Fujita, 2010 | China, Myanmar |
| Hexarthrius vitalisi vitalisi Didier, 1925 | China, Vietnam |
| Hexarthrius vitalisi tsukamotoi Nagai, 1998 | China |
| Hexarthrius vitalisi miyashitai Baba, 1998 | Laos, Myanmar, Vietnam |
| Hexarthrius vitalisi cottoni Baba, 1998 | Laos, Thailand |
| Hexarthrius davisoni Waterhouse, 1888 | India |
| Hexarthrius bowringi bowringi Parry, 1862 | Bhutan, India |
| Hexarthrius bowringi baminorum Okuda & Maeda, 2016 | China, India |
| Hexarthrius melchioritis Séguy, 1954 | China, Myanmar |
| Hexarthrius mniszechi (Thomson, 1857) | India |
| Hexarthrius forsteri forsteri (Hope, 1840) | India |
| Hexarthrius forsteri kiyotamii Nagai, 2000 | Myanmar |
| Hexarthrius forsteri nyishi Okuda & Maeda, 2016 | China |
Previous research (
Despite these advancements, there remains a significant gap in comprehensive research on Hexarthrius, as prior analyses have often lacked sufficient representation of species within the genus or its related genera. Consequently, several critical issues regarding the genus persist, including uncertainties about its phylogeny and morphological evolution, biogeographical patterns, species relationships, the status of disputed species, reported hybrids, and the differentiation among species and subspecies.
In recent years, mitochondrial genomes (mitogenomes) have emerged as essential tools for investigating molecular phylogeny, biogeography, and evolutionary biology across diverse taxa. This approach offers numerous advantages, including a low recombination rate, rapid evolutionary rate, maternal inheritance, the absence of introns, and straightforward processing (
Morphological identification primarily followed the criteria in
The specimens analyzed in this study were dried and preserved in the insect collection of Nanjing Normal University, Nanjing, China. Genomic DNA was extracted from the prothoracic muscle tissue of each species using the TIANamp Genomic DNA Kit (TIANGEN, Beijing, China). DNA concentrations were measured using a Nanodrop 2000 spectrophotometer.
All species’ genomic DNA was sequenced utilizing next-generation sequencing (NGS) on the Illumina NovaSeq platform. Each sample’s library was prepared using the TruSeq™ DNA Sample Prep Kit (insert size 400 bp), and all libraries were sequenced in PE150 mode (paired-end, 2 × 150 bp). Approximately 4 GB of raw data were generated for each sample. The raw data underwent quality filtering with Fastp (
The annotation of mitogenomes was performed using the MITOS WebServer (Bernt et al. 2013) and MitoZ (
The nucleotide composition was computed using MEGA v11, while the AT-skew and GC-skew were derived from the formulas: AT-skew = (A–T)/(A+T) and GC-skew = (G–C)/(G+C) (
A total of 28 mitogenomes from eight genera were included in the phylogenetic reconstruction, comprising 18 sequences from 14 Hexarthrius and 9 sequences from six related genera (
The nucleotide sequences of the 13 PCGs were aligned with MAFFT L-INS-i strategy (
Divergence times among species were estimated using BEAST v2.6.3 (
Ancestral area reconstruction was conducted using RASP (Reconstruct Ancestral State in Phylogenies) v4.0 (
Ancestral state reconstruction (ASR) was performed for eight morphologically significant characters: (1) male clypeolabrum; (2) granulation on the male mandible; (3) basal teeth of the male mandible; (4) denticles between the male mandibular base and major tooth; (5) male antennal club; (6) male dorsal head protuberance; (7) male elytra coloration; and (8) female head structure. These reconstructions were mapped onto the BI tree derived from the PCG matrix, employing parsimony methods in Mesquite v3.81 (Maddison and Maddison 2023). Character histories were traced utilizing unordered state transformations.
The 18 complete mitogenomes of Hexarthrius range from 17,435 bp in H. mandibularis to 19,176 bp in H. rhinoceros rhinoceros (Figs
The A+T content of the Hexarthrius clade mitogenomes varies from 65.5% in H. mandibularis to 69.5% in R. crenatus, with H. mandibularis and H. howdeni showing relatively reduced A+T bias (Fig. S4A). The 23 new mitogenomes displayed either positive AT-skews and negative GC-skews, or the reverse. Closely related subspecies exhibited similar base compositions, except H. parryi deyrollei Parry, 1864 and H. parryi paradoxus Möllenkamp, 1898, which differed in AT-skew direction.
The 13 PCGs showed the ratio of non-synonymous (Ka) to synonymous (Ks) substitution rates (Ka/Ks) ranging from 0.015 (COI) to 0.180 (ATP8), confirming strong purifying selection across all genes (Fig. S4B). COI was the most conservative gene, showing utility for species identification. Nucleotide diversity (Pi) varied from 0.116 (ND1) to 0.195 (ND6), with ND6 showing the highest variability (Fig. S4C).
We calculated the genetic distances of the complete COI genes from 28 mitogenomes (Supporting Information, Table S2). Within Hexarthrius, pairwise distances varied from 0.005 (H. nigritus–H. sanuchi) to 0.176 (H. forsteri kiyotamii–H. buquetti), averaging 0.139 (Supporting Information, Table S2). The unusually low value between H. nigritus and H. sanuchi and the high intersubspecific divergence (0.102) between H. vitalisi vitalisi Didier, 1925 and H. vitalisi tsukamotoi Nagai, 1998 warrant taxonomic reassessment.
Both BI and ML analyses based on both datasets (PCGs and PR) generated congruent topologies with strong support for the monophyly of Hexarthrius (Fig.
Phylogenetic relationships of Hexarthrius clade constructed by BI and ML methods based on 13 mitogenomic PCGs. Bootstrap values and Posterior probability on nodes are separated by a slash. Red branches represent groups with special mitogenomic structures or gene rearrangements. Inferred intermediate processes of the novel rearrangement of Rhaetulus crenatus are indicated in left grey box.
Rhaetulus formed the earliest branch within a larger “Hexarthrius clade”, comprising Rhaetulus + ((Pseudorhaetus + (Weinreichius+Yumikoi)) + (Rhaetus+Hexarthrius)). Prosopocoilus was supported as the sister group to this clade (Fig.
Ancestral area reconstruction indicated that the ancestral range of Hexarthrius+Rhaetus was centered in the eastern Himalayas and Hengduan Mountains of China (Endemism B) (Figs
Across the Hexarthrius clade, BioGeoBEARS identified five vicariance, eight dispersal, and one extinction event (the latter at the divergence of H. davisoni and its sister group) (Fig.
Divergence between the Himalayan and Tropical clades was dated to approximately 8.9 million years ago (Ma) (95% highest posterior density [HPD]: 3.50–19.30 Ma) (Fig.
In the Tropical clade, H. davisoni diverged earliest (~5.23 Ma; 95% HPD: 1.92–11.47 Ma). The H. mandibularis + H. howdeni clade split around 3.47 Ma (95% HPD: 1.09–6.81 Ma), while the H. parryi + (H. sanuchi + H. nigritus) and H. buquetti + H. rhinoceros clades diverged at ~2.56 Ma (95% HPD: 0.64–5.25 Ma).
The Hexarthrius clade diverged from Prosopocoilus approximately 39.67 Ma (95% HPD: 33.55–45.93 Ma). Within the Hexarthrius clade, Rhaetulus branched off at ~27.53 Ma (95% HPD: 19.74–37.05 Ma); Pseudorhaetus diverged from the (Weinreichius+Yumikoi) clade at ~7.77 Ma (95% HPD: 0.72–19.22 Ma); Weinreichius and Yumikoi separated around 1.05 Ma (95% HPD: 0.11–5.83 Ma). The sister taxa Rhaetus and Hexarthrius diverged around 23.77 Ma (95% HPD: 18.66–28.78 Ma).
Prior to this study, gene rearrangements in Lucanidae were sparsely reported, with only one known case of the translocation of trnL (UUR) into the control region in Sinodendron yunnanense Král, 1994 (
Among the major models proposed for mitochondrial gene rearrangements, i.e., recombination, tandem replication with non-random loss (TDNL), illicit priming by tRNAs, and tandem duplication-random loss (TDRL), the TDRL mechanism best fits the patterns observed in R. crenatus rubrifemoratus (
An integrated reading of the phylogeny, divergence times and ancestral-area reconstructions indicates that the core Hexarthrius lineage and its close relatives originated in the eastern Himalaya–Hengduan region (Endemism B). We infer that the early divergence of Rhaetulus from the remainder of the clade was driven largely by vicariance associated with the complex topography of the Hengduan–Himalayan orogen; uplift and attendant habitat fragmentation would have promoted long-term isolation between north-south faunal elements (
Within Hexarthrius itself, the phylogeny resolves a Himalayan clade that remained largely restricted to montane areas and a Tropical clade that expanded southward into Indochina and Sundaland. The divergence between these clades (~8.9 Ma) and subsequent species-level splits (late Miocene–Pleistocene) coincide with episodes of regional orogeny and climatic change that alternately connected and fragmented forest habitats. We infer a pattern in which ancestral populations dispersed from the Himalayan–Hengduan core into lower-elevation corridors, with some lineages colonizing southern India and Sundaland; local extinctions in the ancestral area (Endemism B) and repeated Pleistocene sea-level fluctuations then promoted insular isolation and rapid differentiation in the Tropical clade (
Our phylogenetic results provide a framework to interpret the evolution of adult morphology in Hexarthrius (Figs S5, S6). Morphological distinctions between males of the Himalayan and Tropical clades are notable, including: (1) mandibular granules are small or absent in the Himalayan clade but enlarged in the Tropical clade (except in H. davisoni); (2) denticle number along the inner mandibular margin is usually < 5 in the Himalayan clade and > 5 in the Tropical clade (excluding H. davisoni, H. howdeni, and H. forsteri); and (3) the clypeolabrum is strongly protruding in the Tropical clade but smooth in the Himalayan clade (with exceptions in H. mandibularis and H. howdeni). However, these characters frequently conflict with phylogenetic relationships. For example, H. davisoni, although belonging to the Tropical clade, resembles Himalayan species in mandible shape and denticle patterns, and H. aduncus is difficult to distinguish morphologically from H. vitalisi, despite being sister to H. bowringi, a lineage whose mandibular and cephalic morphology differs substantially (Figs
The evolution of antennal club segmentation also reflects phylogenetic history. A five-segmented antennal club is inferred as the ancestral state (Figs S5, S6). The unique development of a sixth segment in H. forsteri, caused by dense setation on the basal segment, represents an autapomorphy. Expansion of the antennal club is known to evolve independently in other lucanid genera (e.g., Prosopocoilus) and appears unrelated to phylogenetic structure within Hexarthrius.
Mandibular dentition provides additional insight (Figs S5, S6). The ancestral state for the genus consists of two distinct basal teeth (one dorsal and one ventral). This morphology is retained in Rhaetulus, Pseudorhaetus, Rhaetus, and in H. forsteri and H. parryi + (H. sanuchi + H. nigritus). In other lineages, the distal basal tooth has been modified. In the lineage comprising (H. aduncus + H. bowringi) + (H. melchioritis + H. mniszechi) + H. vitalisi, the teeth evolved into a single, medially directed large tooth, sometimes bifurcated. In H. melchioritis and H. mniszechi, subsequent reduction led to the presence or absence of only a ventral tooth. In the Tropical clade, H. davisoni independently evolved a similar medially pointed tooth, whereas other Tropical clade species exhibit a continuous row of small denticles replacing the dorsal tooth.
The denticles between the basal teeth and the main tooth represent another primitive character shared across Hexarthrius and related genera (Figs S5, S6). Denticle reduction occurred convergently in the Himalayan clade and in H. davisoni. In the ancestors of the clade (H. aduncus + H. bowringi) + (H. melchioritis + H. mniszechi) + H. vitalisi, denticles were reduced to a single remnant or eliminated, but occasional individuals of H. aduncus and H. bowringi exhibit partial reappearance of multiple denticles, suggesting reversibility. The absence of denticles in H. howdeni is interpreted as a consequence of miniaturization, as small males across species exhibit reduced dentition.
Other male secondary sexual traits show similar evolutionary trajectories. Both large mandibular granules and dorsal protuberances of the head originated in the clade comprising (H. mandibularis + H. howdeni) + ((H. buquetti + H. rhinoceros) + (H. parryi + (H. sanuchi + H. nigritus))). These characters were subsequently lost in H. howdeni, again likely as a result of miniaturization. The protruding clypeolabrum occurs in ((H. buquetti + H. rhinoceros) + (H. parryi + (H. sanuchi + H. nigritus))) and in the monotypic genus Weinreichius, but ancestral state reconstruction indicates independent origins.
Male elytral coloration exhibits evolutionary lability (Figs S5, S6). Orange elytra occur sporadically within Hexarthrius, being fixed in H. parryi and Y. makii, but geographically variable in H. sanuchi, H. vitalisi, and R. crenatus (
Body size evolution in the H. mandibularis + H. howdeni lineage is striking. Hexarthrius mandibularis represents the largest Hexarthrius species (up to 119.5 mm), whereas H. howdeni is the smallest (max. 63 mm) (
In contrast to male traits, only female head punctation provides phylogenetically consistent signal. Females of the Tropical clade possess coarse, dense punctures, whereas Himalayan clade females have smooth to weakly punctate heads (Fig. S6). Our analysis suggests that the coarse head morphology likely represents the ancestral state for the Hexarthrius clade, while the smooth head evolved independently in Rhaetus and the Himalayan clade of Hexarthrius (Fig. S5H). The intermediate condition in H. vitalisi and H. forsteri reflects transitional morphological evolution, matching their phylogenetic placement. This result indicates that female morphology, despite being overlooked historically, may be more informative for phylogeny than highly variable male characters.
Species boundaries in stag beetles remain problematic (
Conversely, the deep COI divergence among H. vitalisi subspecies indicates cryptic diversity within what is currently treated as a single species (Supporting Information, Table S2). Morphological variation within H. vitalisi is geographically structured: some populations (e.g. H. vitalisi tsukamotoi and an unnamed central Vietnam group) share orange elytra and similarly shaped mandibles, whereas others (e.g. H. vitalisi vitalisi and an unnamed southern China group) display dark brown elytra and distinct pronotal and mandibular morphologies. These patterns, together with geographically disjunct distributions, imply multiple independently evolving lineages that deserve taxonomic reassessment. Until additional specimens, type-material comparisons and nuclear loci are examined, we conservatively retain current subspecific assignments but highlight these cases as priorities for taxonomic revision.
Across the genus Hexarthrius, the average interspecific K2P distance is 0.14, with most interspecific values above 0.05 and intersubspecific values below 0.05 (Supporting Information, Table S2). While this empirical threshold is useful as a preliminary guide, exceptions documented here (notably H. sanuchi / H. nigritus and the H. vitalisi complex) underscore the need for integrative approaches combining mitogenomes, nuclear markers, morphology (including females), and geographic sampling to delimit species robustly in Hexarthrius and allied genera such as Prosopocoilus.
Competing interests. The authors have declared that no competing interests exist.
Data availability statement. Sequence data generated for this study has been accessed to GenBank under accession numbers PQ493465–PQ493486. All datasets and workflows used for the analyses are deposited in FigShare (https://doi.org/10.6084/m9.figshare.28079942). The specimens studied are preserved in School of Life Sciences, Nanjing Normal University, Nanjing, China.
Funding. This study was funded by the Natural Science Foundation of Jiangsu Province (No. BK20201009) to Zhi-Teng Chen.
Author contributions. XHYZ: Conceptualization, Methodology, Software, Formal analysis, Investigation, Writing – original draft. YQ: Investigation, Resources, Writing – original draft. ZTC: Methodology, Validation, Formal analysis, Data curation, Writing – review and Editing, Supervision, Project administration, Funding acquisition.
We would like to express our sincere gratitude to Mr An-Jun Shui, Jun-Young Lee, Mu-Chen Su, Jing-Hong Wang, Rong-Chuan Tao, Fa-Qiang Su, and Chang-Qing Chen for providing valuable specimens and information, to Mr Lu-Yun Zhang for his assistance in wild collection, and to Mr Da Pan for his assistance in phylogenetic analysis. We also thank the editor and reviewers for insight comments.
Figures S1–S6
Data type: .zip
Explanation notes: Figure S1. Mitochondrial maps of Hexarthrius parryi paradoxus, Hexarthrius parryi deyrollei, Hexarthrius sanuchi, Hexarthrius buquetti, Hexarthrius nigritus, Hexarthrius rhinoceros rhinoceros. — Figure S2. Mitochondrial maps of Hexarthrius aduncus aduncus, Hexarthrius aduncus igarashiae, Hexarthrius vitalisi vitalisi, Hexarthrius vitalisi tsukamotoi, Hexarthrius davisoni, Hexarthrius bowringi baminorum. — Figure S3. Mitochondrial maps of Hexarthrius melchioritis, Hexarthrius mniszechi, Hexarthrius forsteri forsteri, Hexarthrius forsteri kiyotamii, Prosopocoilus doris. — Figure S4. Unusual variability in mitogenomic features of Hexarthrius. A Scatterplots of A+T content and AT-skew values for whole mitogenomes of Hexarthrius; B Ratio of non-synonymous (Ka) to synonymous (Ks) substitution rates of 18 Hexarthrius mitogenomes; C Sliding window analysis of 13 aligned PCGs among 18 Hexarthrius mitogenomes, the red line shows the value of nucleotide diversity (Pi). — Figure S5. Ancestral state reconstruction for eight morphological characters in Hexarthrius clade. A Reconstruction for clypeolabrum; B Reconstruction for granules over mandible; C Reconstruction for basal teeth of mandible; D Reconstruction for denticles between mandibular base and major tooth; E Reconstruction for antennal club; F Reconstruction for dorsal protuberance of head; G Reconstruction for elytra color; H Reconstruction for female head. — Figure S6. Morphological characters of the Hexarthrius clade used in the ancestral states reconstruction. Characters A–H and their states identical to those in Figure S5.
Table S1, S2
Data type: .zip
Explanation notes: Table S1. Information of mitogenomes used in this study. — Table S2. Values of K2P genetic distance among the DNA barcodes (COI).