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Corresponding author: Enrico Schifani ( enrsc8@gmail.com ) Academic editor: Andreas Zwick
© 2022 Enrico Schifani, Antonio Alicata, Mattia Menchetti, Lech Borowiec, Brian L. Fisher, Celal Karaman, Kadri Kiran, Wala Oueslati, Sebastian Salata, Rumsaïs Blatrix.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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The West-Palearctic region is a diversity hotspot for the ant genus Aphaenogaster. Species in this region are characterized by high morphological variation, which has led to their subdivisioninto different infrageneric groups. The very first classification in three subgenera, dated 1915, was gradually replaced by eight species-groups. To probe the evolutionary consistency of these species-groups, we sequenced 46 species from all eight species-groups and biogeographic sectors of the region, using one mitochondrial (COI) and six nuclear markers (EPICs), and interpreted the results by integrating qualitative morphology. Our results demonstrate the non-monophyly of all formerly recognized subgenera and species-groups, except for the crocea group. We use the phylogeny and morphological characters to propose a new classification of six monophyletic species-groups (crocea, gibbosa, graeca, pallida, sardoa, subterranea). The pallida, subterranea and sardoa (formerly testaceopilosa) groups attain monophyletic status by reassigning a few taxa. The gibbosa group is to be considered exclusively Western-Mediterranean until further assessments of similar Eastern species. The new graeca group is established by including former members of the splendida and subterranea groups, while the polyphyletic cecconii, obsidiana, and splendida groups are dismissed. Notably, the first is not part of the tropical Deromyrma clade as previously thought, while at least two independent clades which require further investigation are composed of species from both the cecconii and splendida groups, suggesting repeated morphological convergences based on similar ecological adaptations. Finally, A. cardenai is confirmed to be a significantly divergent lineage. In addition, three Aphaenogaster species are moved to different genera: Messor asmaae (Sharaf, 2018) comb. nov., Messor isekram (Bernard, 1977) comb. nov., and Pheidole sarae (Sharaf, 2018) comb. nov. Further studies should address the evolutionary relationships between the clades recovered in this study.
apomorphy, biogeography, diversification, Mediterranean fauna, morphological convergence, plesiomorphy, Myrmicinae
The ant genus Aphaenogaster Mayr, 1853 is part of the tribe Stenammini Ashmead, 1905, along with the genera Goniomma Emery, 1895, Messor Forel, 1890, Novomessor Emery, 1915, Oxyopomyrmex André, 1881, Stenamma Westwood, 1839, and Veromessor Forel, 1917 (
The type species of the genus Aphaenogaster, A. sardoa Mayr, 1853, was described from the West-Palearctic region, specifically from the Mediterranean island of Sardinia (
Morphological diversification in particular encouraged the introduction of different infrageneric classifications, often largely based on the West-Palearctic fauna, the first of which was established by
Later
In the last decade, for what concerns the ‘true’ Aphaenogaster, there was the first influx of scattered phylogenetic data produced by the increasing use of molecular phylogenetics, mostly coming from the West-Palearctic or Nearctic faunas (
Our aim was to finally produce a phylogenetic reconstruction covering all the species-groups recognized in the West-Palearctic region, testing for the first time the evolutionary coherence of this framework, including clarifying the groups’ relationship with the tropical “Deromyrma clade”, and trying to determine whether key morphological characteristics traditionally used to characterize these groups were apomorphic or convergent.
The West-Palearctic boundaries are here considered to comprise the Mediterranean regions of Africa and Asia. In this definition, we followed the traditional concept of
We define species-groups as mutually exclusive, monophyletic entities comprising multiple closely related species of the same genus.
For the composition of each species-groups, we adopted the most recently published classifications. After each taxon, we report its state-level distribution according to AntMaps (
We follow the recent definition by
Defining combination of morphological characters (after
According to its very recent definition, the Siculo-Maghrebian crocea group comprises 10 taxa formerly included in the gibbosa, splendida or subterranea groups, grouped together based on male and worker morphology and biogeography (
Defining combination of morphological characters (based on
This group comprises taxa sharing similar worker and/or male morphology initially thought to be close to the subterranea or the testaceopilosa groups (
Defining combination of morphological characters (based on
The obsidiana group was defined as a small group of 3 East-Mediterranean species based on worker morphology (
Defining combination of morphological characters (from
A circum-Mediterranean group based on worker morphology, which includes 11 taxa including those presented by
Defining combination of morphological characters (from
A mostly East-Mediterranean species-groups recently redefined by
Defining combination of morphological characters (from
A mostly East-Mediterranean group defined by
Defining combination of morphological characters (based on
A large Euro-Maghrebian group based on worker and queen morphology (
Defining combination of morphological characters (from
We consider A. cardenai Espadaler, 1981 (Spain), A. sardoa s. str. Mayr, 1853 (Algeria, Italy, Morocco, Tunisia), A. sardoa anoemica Santschi, 1910 (Morocco), and A. ujehlyi Szabó, 1910 (Tunisia) not to belong to any group. Although A. cardenai was until recently placed within the splendida group (
We consider uncertain the position of A. burri (Donisthorpe, 1950) (Türkiye), A. depressa Bolton, 1995 (Türkiye), A. pallescens Walker, 1871 (Egypt), A. saharensis (Bernard, 1953) (Algeria), and A. sangiorgii Emery, 1901 (Greece). Morphology may suggest that the first two could be tentatively associated with the subterranea group, and the latter one to the pallida group, but their statuses are unclear since they are all known from only the holotype specimens, which in the case of A. burri and A. sangiorgii are queens (
For reasons we detail in the results section, we do not consider A. asmaae Sharaf, 2018 (Oman), A. isekram Bernard, 1977 (Algeria), or A. sarae Sharaf, 2018 (Oman) as part of the West-Palearctic Aphaenogaster diversity.
DNA was extracted using the Qiagen DNeasy Blood and Tissue Kit (Qiagen, Hilden, Germany), following the protocol by
Sanger dideoxy sequencing of PCR amplicons was performed by Eurofins Genomics (Germany) in both directions using the same primers as those used for the initial amplification. Sequences were edited using CodonCode Aligner (CodonCode Corporation, Dedham, MA, USA), and contigs were built from forward and reverse sequences generated for each gene. Conflicting base calls were coded as missing. Sequences were aligned with Muscle (
The following numbers of new sequences were produced in this study: 90 for COI (GenBank accession numbers OM896791-OM896880), 82 for ant.1 (OM939213–OM939294), 84 for ant.263 (OM939295–OM939378), 85 for ant.346 (OM939379–OM939463), 67 for ant.389 (OM939464–OM939530), 74 for ant.505 (OM939531–OM939604), 71 for ant.1401 (OM939605–OM939675). Amplification success was 95 % for COI, 88 % for ant.1, 90 % for ant.263, 91 % for ant.346, 72 % for ant.389, 80 % for ant.505 and 76 % for ant.1401. DNA sequence alignments are provided in the Supplementary material
A complete list of the specimens sequenced in our investigation, including their geographic origin and collecting data is provided in Supplementary material
In addition, in order to test a possible relatedness between some West-Palearctic species and members of the tropical Deromyrma clade sensu
Finally, we chose as outgroups the two Stenammini species Stenamma debile (Foerster, 1850) and S. striatulum Emery, 1895 since the genus Stenamma is sister to both the ‘true’ Aphaenogaster and the Deromyrma clade (
Voucher specimens sequenced in this study were marked with unique identifiers which are reported in the Supplementary material
We modify the existing species-groups framework by interpreting the phylogenetic results in light of qualitative morphological characters of the species. Qualitative morphological characters are intended as discrete characters (presence or absence of certain traits) easily observable by trained myrmecologists without the need of detailed numerical recording (
The sequenced species from the Deromyrma clade (swammerdami group) were recovered as sister to all other investigated species. Similarly, A. cardenai was recovered as sister to all other Mediterraean species, and then, a well-supported clade containing A. striativentris, A. gibbosa, A. ulibeli and A. mauritanica was recovered as sister to all the remaining species. Several highly supported clades were recovered among the remaining species, but the relationships among these clades were poorly supported, hindering any inference on the phylogenetic relationships among them. Most notably, we found as well supported (posterior probability: 0.95–1), a clade containing A. cecconii, A. rugosoferruginea, A. festae and A. splendida, a clade containing A. subterraneoides, A. finzii, A. foreli, A. dulcineae and A. pallida, a clade containing A. illyrica and A. aktaci, a clade containing A. strioloides, A. crocea croceoides, A. sicula, A. fiorii and A. trinacriae, a clade containing A. epirotes, A. holtzi, A. subterranea, A. maculifrons and A. ichnusa, a clade containing A. charesi, A. ovaticeps and A. peloponnesiaca, a clade containing A. striativentris, A. gibbosa, A. ulibeli and A. mauritanica, and a clade containing all the members of the testaceopilosa group plus A. sardoa. The placement of the following species remained unresolved: A. olympica, A. italica, A. muschtaidica and A. obsidiana. This general topology was congruent in both kinds of phylogenetic reconstructions (Bayesian inference and maximum likelihood) (Fig.
Phylogeny of the West-Palearctic Aphaenogaster ants, including all the species-groups of the region as well as the tropical Deromyrma clade based on a Bayesian analysis of one mitochondrial (COI) and six nuclear (EPICs) markers. Support values represent Bayesian posterior probability values (PP). In the rightmost part of the figure, we present the new species-groups boundaries based on the interpretation of the phylogenetic results that is offered in the Discussion section. Photographs of worker specimens from A. cecconii (CASENT0179868, photo by Erin Prado), A. crocea croceoides (CASENT0907682, syntype, photo by Will Ericson), A. gibbosa (CASENT0914409, photo by Zach Lieberman), A. obsidiana (CASENT0280957, photo by Shannon Hartman), A. dulcineae (CASENT0280959, photo by Michele Esposito), A. splendida (CASENT0280965, photo by S. Hartman), A. subterranea (CASENT0173580, photo by April Nobile), A. testaceopilosa (CASENT0280966, photo by S. Hartman), A. sardoa (CASENT0916080, syntype, photo by Anna Pal), A. cardenai (CASENT0249624, photo by Z. Lieberman), A. swammerdami (CASENT0489647, photo by A. Nobile).
An important difference between phylogenetic reconstructions based on mitochondrial and nuclear markers was that, according to EPIC markers, A. muschtaidica was included in the clade containing A. epirotes, A. holtzi, A. subterranea, A. maculifrons and A. ichnusa, whereas it was outside of this clade following the COI marker. As a whole, the phylogeny based on EPIC markers only was less resolved than that based on COI markers only, but concatenation of both types of markers provided a better result as any of the two marker types taken individually. Every species proved to be monophyletic save the case of A. sporadis, recovered within an unresolved clade with A. balcanica and A. picena.
We obtained the following results concerning the status of each group (Fig.
Status: polyphyletic. The group corresponds to three independent lineages in our tree (one per each species sequenced). In two cases (A. cecconii and A. charesi), the position of these species is strongly supported (posterior probability: 0.95–1) and they are placed as sister to lineages belonging to the non-monophyletic splendida group, while the position of the third (A. olympica) as a sister to A. italica, A. muschtaidica, and A. obsidiana is weakly supported (posterior probability: 0.65).
Status: monophyletic. All the sequenced species of the crocea group form a single monophyletic clade with strong support. The two Maghrebian taxa (A. crocea croceoides, A. strioloides) are sister to the species endemic to Italy and Malta (A. fiorii, A. sicula, A. trinacriae).
Status: polyphyletic. Most of the species are strongly supported in a single clade (posterior probability: 1), however, the position of A. italica and A. muschtaidica is separate in the tree as sister species to A. obsidiana with weak support (posterior probability: 0.65).
Status: polyphyletic. A. epirotes clusters with high support (posterior probability: 1) as the sister to a group comprising A. holtzi (pallida group) plus all of the species from the subterranea group except A. aktaci. On the other hand, A. obsidiana is positioned separately with a low support (posterior probability: 0.52).
Status: polyphyletic. Most species form a well-supported clade (posterior probability: 0.95–1), except A. holtzi which is part of the well-supported clade which is also formed by A. epirotes and most of the subterranea group (posterior probability: 1).
Status: polyphyletic. The species of the splendida group form three independent clades in the tree. Aphaenogaster aktaci is strongly supported as the sister species of A. illyrica from the subterranea group (posterior probability: 1). The other species are dividedinto two well-supported clades, each with a species of the cecconii group as its respective sister taxon, one also formed by A. splendida, A. festae, A. rugosoferruginea, and one also formed by A. ovaticeps, A. peloponnesiaca (posterior probability: 0.95–1).
Status: non-monophyletic. All of the species form a well-supported clade except for A. illyrica which is clearly recognized as the sister species of A. aktaci from the splendida group (posterior probability: 1).
Status: paraphyletic. The group is formed by a single clade consisting of two well-supported smaller clades (posterior probability: 1): one which comprises all the European taxa except A. senilis, and the other which is formed by all the North African taxa plus A. senilis. However, A. sardoa is also placed in the latter clade.
Aphaenogaster cardenai is well-supported in its position as an independent lineage from all the other West-Palearctic Aphaenogaster species (posterior probability: 1). Aphaenogaster sardoa is placed within the testaceopilosa group as mentioned above.
The Malagasy species form a well-supported clade with no close relationship with any of the W-Palearctic Aphaenogaster species-groups (posterior probability: 1).
Based on the available phylogenetic and morphological evidence, we propose to recognize six West-Palearctic species-groups of Aphaenogaster, while commenting the critical issues of the remaining three main clades (Fig.
The definition and composition of this group previously given in the Materials and methods remains unchanged. The group is thought to extend from the Maghreb to Sicily and neighboring regions of Malta and Italy.
The existing morphological definition of the group (see Materials and methods) describes it well but also includes two species (A. italica and A. muschtaidica) whose position is unclear, but which appear to be unrelated to the group. Both have a more Eastern distribution compared to the species which are safely assigned to the group on a phylogenetic basis, as well as A. theryi which occurs sympatrically with A. mauritanica. The affiliation of A. theryi should be established in future studies, while the group should be considered restricted to the W-Mediterranean (Italy almost entirely excluded except for a small North-Western sector where A. gibbosa is thought to occur).
Our phylogenetic analysis strongly supports a close relatedness between A. aktaci (originally in the obsidiana group and more recently in the splendida group) and A. illyrica (originally in the subterranea group). Aphaenogaster illyrica is very similar to A. graeca morphologically, so that the two were classified in the graeca complex within the subterranea group. Aphaenogaster aktaci shares with them a highly similar morphology, but may also somewhat resemble the darkest species from clades B and C (A. ovaticeps, A. rugosoferruginea). We thus propose to consider the graeca complex as a species-groups considering its independence from the subterranea group and list A. aktaci, A. graeca, and A. illyrica as its members. Further assessments regarding the phylogenetic position of species of the former splendida not sequenced in this study may be relevant, yet none is particularly close to the morphology of the graeca group species which we define according to the following combination of characters (based on workers, see Figure
Aphaenogaster workers of species now classifiedinto the new graeca species-groups: A A. aktaci (CASENT0922687, photo by M. Esposito); B A. illyrica (CASENT0872099, holotype, photo by Lech Borowiec); C A. graeca (ANTWEB1041239, paratype, photo by Roland Schultz). Photographs from www.antweb.org.
The morphological definition of the group should be implemented by highlighting the lack of a strong mesoepinotal furrow which was already used by
Lateral profile of Aphaenogaster workers of species from the pallida and subterranea groups. In green, species of the pallida group, with arrows indicating the long and often abundant erect hairs on the dorsal side of the head. In violet, species from the subterranea group with arrows indicating the deep metanotal groove (including A. holtzi and A. lesbica previously attributed to the pallida group, A. epirotes and A. subcostata previously attributed to the obsidiana group). A A. dulcineae (photo by M. Esposito, CASENT0280959); B A. holtzi (CASENT0904178, syntype, photo by W. Ericson); C A. finzii (CASENT0914232, photo by M. Esposito); D A. ichnusa (CASENT0913132, syntype, photo by Z. Lieberman); E A. pallida (CASENT0280960, photo by S. Hartman); F A. maculifrons (CASENT0922688, photo by M. Esposito); G A. subterraneoides (CASENT0281536, photo by Estella Ortega); H A. subterranea (CASENT0172716, photo by A. Nobile); I A. lesbica (CASENT0907690, syntype, photo by W. Ericson); J A. kurdica (CFH000010, photo by Donat Agosti); K A. epirotes (CASENT0281535, photo by E. Ortega); L A. subcostata (FOCOL1221, syntype, photo by Christiana Klingenberg). Photographs from www.antweb.org.
The morphological definition of the testaceopilosa group sensu
Aphaenogaster species from the sardoa group. Photographs B and D depict A. sardoa specimens from Sicily (queen and male respectively, photos by E. Schifani). Photographs A, C, E are from www.antweb.org: A A. tinauti queen (CASENT0913796, photo by W. Ericson); C A. curiosa male (CASENT0913109, syntype, photo by W. Ericson); E A. praedo worker (CASENT0904158, syntype, photo by Z. Lieberman). Our reassessment suggest that most characters used by
The general aspect and behavior of all species belonging to the sardoa group makes its identification particularly easy even with the naked eye in the field by any experienced myrmecologist. The group is distributed throughout Southern Europe and the Maghreb.
The morphological definition of the group should be implemented by removing the ‘shallow sculpture’ as a defining character, which allows to accommodate A. epirotes according to the phylogenetic results. The only species of the former obsidiana group we did not sequence, A. subcostata, shares the same general traits of the subterranea group definition plus a strong sculpture like that of A. epirotes, and is therefore reassigned to the subterranea group on a morphological basis (on the other hand, A. obsidiana lacks a deep mesoepinotal furrow) (Figure
This well-supported clade (boostrap value: 0.95–1) contains the species after which the former cecconii and splendida groups were named, as well as two other species of the splendida group (A. festae and A. rugosoferruginea). Within the former cecconii group, A. cecconii and two non-sequenced species, namely A. lykiaensis and A. phillipsi, are the only ones with a neck-like elongation of the head, which may represent the only criterion to tentatively hypothesize the affiliation of the other members of this former group to the clades recovered in this study (
This well-supported clade (boostrap value: 0.95-1) contains a second group of species from the former splendida group (A. ovaticeps, A. peloponnesiaca) alongside another species from the former cecconii group (A. charesi). The similarities between species of the former cecconii and splendida groups mentioned for clade A should be kept in mind in this second case. In the same way, the difficulty to find morphological criteria allowing to assign the non-sequenced species of both former groups to either clade highlights the need of further molecular and morphological investigationsinto the composition and evolution of clade B. All species are Eastern Mediterranean.
Aphaenogaster italica, A. obsidiana, A. olympica, A. muschtaidica form a clade which has a very weak support (bootstrap value < 0.89 in all nodes), not allowing us to evaluate whether its members are truly closely related. Nonetheless, it is worth noting there is a substantial degree of morphological similarity with the exception of A. olympica (originally in the cecconii group). Aphaenogaster italica and A. muschtaidica (originally in the gibbosa group) and A. obsidiana (originally in the obsidiana group) share the following characters: black pigmentation, lack of deep metaepinotal furrow in profile view, medium to strong sculpture. For what concerns A. obsidiana, it is important to note that its morphology deviates in several aspects from that of A. epirotes and A. subcostata (formerly forming together the obsidiana group and now moved to the subterranea group): i) the background microsculpture of the dorsum of the mesonotum and the sides of the propodeum is distinctively microreticulated instead of dull and shiny (contradicting the group’s definition by
Aphaenogaster isekram and A. asmaae are assigned to the genus Messor on a morphological basis. The description of A. isekram as a morphologically particularly aberrant Aphaenogaster species did not takeinto account the existence of extremely similar Messor species such as M. rufotestaceus (Foerster, 1850) (Iran, but AntWeb sample CASENT0264396 from the United Arab Emirates is currently identified with the same name) and M. lamellicornis Arnol’di, 1968 (Kazakhstan) (
In addition, A. sarae, according to the description and images presented by
Names excluded from Aphaenogaster and examples of morphologically similar species belonging to the new assigned genus (photographs from www.antweb.org). A, B Messor asmaae comb. nov., CASENT0922290, photo by M. Esposito; C, D Messor isekram comb nov., CASENT0913609, syntype, photo by W. Ericson; E, F Messor lamellicornis, CASENT0281598, photo by M. Esposito. G Pheidole sarae comb. nov., CASENT0922294, photo by M. Esposito; H Pheidole pallidula, CASENT0249410, photo by Shannon Hartman.
Now that their generic identity has been reassessed, the status of these three taxa should be further investigated to test whether they may be synonyms of other congeneric species.
While the phylogenetic relationships between many of the clades we recovered have yet to be clarified, our results demonstrate that, following all past schemes, the great morphological diversification of the Aphaenogaster was largely misinterpreted in its evolutionary significance and a new perspective is needed. Almost all of the current and past infrageneric classifications largely defined non-monophyletic groups. This was also the case with the former subdivision in subgenera: Aphaenogaster s. str. would be monophyletic on its own, yet it is nested within Attomyrma, making the latter paraphyletic. The placement of A. cecconii within the former subgenus Deromyrma was also incorrect, as it should belong to Attomyrma, making Deromyrma sensu
On one hand, the monophyly of the pallida, subterranea and testaceopilosa species-groups – the latter renamed sardoa group and now corresponding to the former nominotypical subgenus – was easily achieved by reassigning only a few species on clear morphological bases. The unclear clustering of the specimens identified as A. balcanica, A. picena, and A. sporadis emphasizes the need of a taxonomic revision of the sardoa group, whose boundaries are, however, very clearly defined. On the other hand, the splendida and cecconii group, highly polyphyletic, had to be dismissed. While sequencing all the species from these two groups stands as an important objective for further research, phylogenetic results revealed a very interesting relationship between the two groups: the ‘cecconii-like’ and the ‘splendida-like’ morphologies each evolved independently two or three times, and at least twice ‘cecconii-like’ species were sisters to ‘splendida-like’ species. It is possible that the peculiar ‘cecconii-like’ morphology represents a form of adaptation to the light-avoiding or troglobiotic lifestyle that characterizes the species of this group, since similar traits are exhibited by other troglobiotic Palearctic species, such as the Japanese A. gamagumayaa Naka and Maruyama, 2018 (
When morphology-based infrageneric divisions were defined, in most cases no effort was made to predict which characters were apomorphic or plesiomorphic, or which ones were driven by an adaptive value and which ones were not—tasks that were very difficult or impossible to achieve in many cases without phylogenetic data, or were simply beyond the aims of the systematic works produced at that time. When the crocea group was split from the subterranea group (
Integrating phylogenomic data to address the low support of the backbone of our phylogenetic reconstruction, as well as recovering the additional West-Palearctic species which could not be sequenced in this study would help clarify those relationships which could not be resolved here, improving our understanding of the radiation of this genus. Further investigation should also expand to the species from the other, less diverse regions (the East-Palearctic and the Nearctic), which would be important to fully unravel the biogeographic history of the genus (
ES, AA and RB conceived the study and organized the selection of species to be sequenced. RB conducted the molecular analyses. ES and AA curated the morphological parts. ES prepared the first draft of the manuscript. MM and ES curated the graphic parts. All authors participated in the collection and identification of specimens and the preparation of the final draft of the manuscript.
We are grateful to everyone who helped us collect the specimens used in this study: Volkan Aksoy (Türkiye), Gregor Bračko (Slovenia), Simone Costa (Italy), Antonino Dentici (Italy), Mathias Dezetter (France), Piergiorgio Di Pompeo (Italy), Christophe Galkowski (France), Philippe Geniez (France), Emanuele Genduso (Italy), Vincenzo Gentile (Italy), Kiko Gómez (Spain), Roberto Huertaz (Spain), Konstantinos Kalaentzis (Greece), Claude Lebas (France), Guglielmo Maglio (Italy), David Mifsud (Malta), Francisca Ruano (Spain), Giorgio Sabella (Italy), Andrea Salvarani (Italy), Alberto Sanchez (Spain), Alberto Tinaut (Spain), Roberto Viviano (Italy). Moreover, we wish to thank three anonymous referees as well as the editor Andreas Zwick for their constructive comments which led to a significant improvement of our manuscript.
Funding: Data used in this work were partly produced through the GEMEX technical facilities of the Centre d’Ecologie Fonctionnelle et Evolutive with the support of LabEx CeMEB, an ANR Investissements d’avenir program (ANR-10-LABX-04-01). Support for this research was provided by “la Caixa” Foundation (ID 100010434) to Mattia Menchetti (grant LCF/BQ/ DR20/11790020). The Turkish material used in this project was provided with the support of the projects numbered 109T088 and 111T811 supported by the Scientific and Technological Research Council of Türkiye (TÜBİTAK), and the project numbered 2018-135 of the Trakya University Scientific Research Unit.
Sequence alignments
Data type: .fas.(Alignments are included as FASTA files
Explanation note: The file contains the alignments for all the genetic sequences produced in this study.
List of investigated samples
Data type: .xlsx
Explanation note: The file contains the complete list of samples used in our analyses. For each sample, we provide the following information: voucher identifier, species-level identification, species-groups (this classification does not takeinto account the results of the analyses), label in the phylogenetic trees, specimen code, label for extraction, latitude and longitude (decimal degrees), locality name, name of the collector(s), name of the identifier(s), Genbank accession number for COI and for the 6 EPIC genes sequenced.
Supplementary phylogenetic trees
Data type: .zip
Explanation note: Supplementary file S3: Maximum likelihood phylogeny based on all markers concatenated. — Supplementary file S4: Bayesian phylogeny based on mtCOI. — Supplementary file S5: Maximum likelihood phylogeny based on mtCOI. — Supplementary file S6: Bayesian phylogeny based on all EPIC markers concatenated. — Supplementary file S7: Maximum likelihood phylogeny based on all EPIC markers concatenated.
Synoptic list of species and new species-groups classification
Data type: .svg
Explanation note: The file contains a synoptic list of the West-Palearctic Aphaenogaster and, for each taxon, its classification before and after this study.