Research Article |
Corresponding author: Mario Schädel ( mario.schaedel@gmail.com ) Academic editor: Martin Fikácek
© 2022 Mario Schädel, Margarita Yavorskaya, Rolf Beutel.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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The earliest known fossil beetle †Coleopsis archaica is re-examined using Reflectance Transformation Imaging (RTI). The morphological observations are evaluated with respect to phylogenetic implications and the early evolution of Coleoptera. †Coleopsis archaica belongs to an early Permian branch of beetles, outside a monophyletic unit comprising Coleoptera (in the widest sense) excluding †Tshekardocoleidae. This clade is mainly characterized by a complex of apomorphic features: elytra with epipleura and with a close fit with the posterior body, thus forming a tightly sealed subelytral space. In contrast to this, the elytra of †C. archaica and †Tshekardocoleidae cover the metathorax and abdomen in a loose tent-like manner and posteriorly distinctly surpass the abdominal apex. So far, no synapomorphies of the two taxa from the first half of the Permian have been identified. The very short and transverse pronotum is likely an autapomorphy of †C. archaica. A thorough documentation of the structural features of early beetle fossils should have high priority. RTI is a very promising tool to obtain new and well-founded morphological data, which will allow a thorough phylogenetic evaluation of Permian beetles in future studies. We extended the conventional RTI workflow by focus merging and panoramic stitching, in order to overcome previous limitations. Taxonomic re-arrangements of stem group beetles including †C. archaica were suggested in recent studies by A.G. Kirejtshuk and co-workers. As they are not based on shared derived features they are irrelevant in a phylogenetic and evolutionary context.
oldest beetle, Paleozoic, Lower Permian, fossil, stem group, imaging techniques
Beetles form a very species-rich group comprising almost 400 000 described species (e.g.
†Coleopsis archaica Kirejtshuk, Poschmann and Nel, 2014 has been described as the oldest known fossil beetle in a study with a main focus on the elytral venation of the extinct group †Tshekardocoleidae (
Reflectance transformation imaging (RTI) is a set of techniques used to capture images of the same field of view under different lighting conditions. The data are processed into a digital model of the photographed object that allows for virtual relighting. The virtual relighting is not limited to recreating the original lighting conditions, and it is possible to change various aspects of the model, such as removing surface colours and increasing the specularity of the surface. The RTI model also contains information on the topology of the imaged surface in form of surface normals (vectors that are perpendicular to the surface) for each pixel. Therefore, the RTI methods can, apart from virtual relighting, also be used to create 3D models (shape from shading) (
In order to create an RTI model, images must be taken with a light source positioned differently for each individual image. The positions of the light sources have to be known in order to compute a model using the standard techniques (
RTI has been widely adopted in various subfields of archaeology (
Even though †C. archaica was previously documented with drawings, photographs and SEM micrographs, the description is very short and apparently not fully compatible with the single known specimen. The obvious key role of †Coleopsis archaica in the phylogeny and early evolution of Coleoptera, and the availability of the Reflectance Transformation Imaging (RTI) as an alternative, complementary imaging technique induced us to re-examine the holotype. We demonstrate a fast and automated workflow to capture and process RTI images at a very small scale, with the option to extend the narrow field of view that results from high magnification through panoramic stitching, and also to recognize surface structures that are located on uneven surfaces of distinctly compressed insect fossils by recording and processing focus stacks.
While there is a relative abundance of fossils from the Permian that can be attributed to Coleoptera (including its stem group) (e.g.
This study is centred around a single fossil specimen, preserved as a thin layer of organic substance on two slabs of rock (part and counterpart). The specimen with the collection number ZfB 3315 is housed at the Geowissenschaftliche Sammlungen des Saarlandes, Referat D/2, Arten- und Biotopschutz, Zentrum für Biodokumentation in Schiffweiler, Germany.
The specimen originates from a small outcrop near the village Grügelborn near the town St. Wedel in the municipality of Freisen (Saarland, Germany) (
The rocks containing the fossil belong to the Humberg bed (silty claystones), located in the uppermost part of the Meisenheim Formation (Odernheim Unit, M10 = L-O10), which itself is part of the Rotliegend lithostratigraphic unit (
The specimen was photographed using a Keyence VHX 7000 digital microscope with inbuilt focus merging and panoramic stitching functionality using coaxial white light with a cross-polarising filter setup. In some cases, multiple images of the same view with different exposure time settings were recorded for later processing.
In a different setup, images with different illumination directions (see next section) were recorded using a Nikon D7200 DSLR camera in combination with a Laowa 25 mm, f/2.8, 2.5–5× magnification objective. The specimen was placed on the microscopy table of a modified (upper part removed) Zeiss Standard microscope to position the object along the x, y and z axes. Images were taken of both rock slabs with different fields of view and different object distances. This was done without moving the microscopy table relative to the camera (except for the manipulation in the z-dimension) or the specimen relative to the microscopy table.
For reflectance transformation imaging (RTI) a dome-type setup (e.g.,
A metal ball of a ballpoint pen, positioned on a piece of Fimo polymer clay (STAEDTLER Mars GmbH & Co. KG), served as a reference sphere to capture the light directions inside the RTI dome in the field of view of the camera at the focal plane of the lens (see also
For processing the captured images of the RTI setup, we used ‘relight’ (
Images of the same field of view were aligned using the command line program ‘align_image_stack’ of the Hugin software suite (GPL v. 2 license). The aligned images were then merged into in-focus images (extended depth of field) using ‘enfuse’ (GPL v. 2 license). The former two processes were also automated using a Bash script. Panoramic (stitched) normal map images of the fossil were created manually using GIMP (GPL v.3.0 license). The normal maps were converted into height maps – image files in which the (relative) height of points on a surface are coded as grey values – using the program AwesomeBump (GPL v. 3 license) on a Debian based Linux system with an Nvidia Quadro K4000 graphics card. In some cases (unrelated to the RTI processing), images of the same field of view with different exposure settings were merged (HDR, high dynamic range) using ‘enfuse’.
GIMP was used to optimise the images for colour, brightness, and contrast and to merge images of part and counterpart of the fossil by mirroring one image and placing it on top of the other as a separate layer with 50% transparency. Inkscape (GPL v.3.0 license) was used to produce the drawings and to arrange the figure plates. The circular graphic legends for the normal map and height map images (depicting the reference sphere) were made following (
All herein used digital microscopy images are available from the Zenodo data repository at https://doi.org/10.5281/zenodo.6550817. Information regarding the construction and use of the RTI dome setup, all images captured with the RTI setup, as well as short instructions and scripts for processing the generated image data are available at https://doi.org/10.5281/zenodo.6550889.
Coleopteroidea Handlirsch, 1903 (= Coleopterida)
Coleoptera Linnaeus, 1758
?Coleoptera. ?Tshekardocoleidae
Tshekardocoleidae
gen. et sp. indet.
Coleopsis archaica Kirejtshuk, Poschmann and Nel 2014 in Kirejtshuk, Poschmann, Prokop, Garrouste and Nel 2014, p. 6, figs.1,4
Coleopsis archaica Kirejthuk and Nel 2016, p. 71, figs. 1–5
Coleopsis archaica Kirejtshuk 2020, p. 10, figs. 2 A–C
ZfB 3315, Zentrum für Biodokumentation, Schiffweiler, Germany.
General features. The slender beetle is 7.8 mm long (including mandibles and elytra) and reaches its maximum width of 2.5 mm slightly anterior to the posterior third of the body. The anterior part of the body with the prognathous head and the short and transverse prothorax is unusually short in relation to the remaining body (pterothorax + abdomen), which comprises ca. 80% of the total length. The elongate elytra reach beyond the abdominal apex (Fig.
†Coleopsis archaica, holotype, ZfB 3315, microscopic images, coaxial cross-polarised light, multi exposure bracketing. A photograph of more complete side (part); B less complete side (counterpart) virtually projected onto the part (the counterpart is mirrored); C photograph of the counterpart. Abbreviations: A, Analis (anal vein); abd, abdomen; ce, compound eye; CuA, Cubitus anterior; edt, elytral distal tip; elc, elytral antero-proximal corner; elf, elytral flange; elpm, elytral posterior margin; hw, hind wing; iv, intercalary veins; leg1, foreleg; pnlp, lateral process of the pronotum; pn, pronotum.
†Coleopsis archaica, holotype, ZfB 3315. A–C microscopic images, coaxial cross-polarised light, multi exposure bracketing. A detail of the head and prothorax region, part; B detail of the head and prothorax region, counterpart; C: detail of the left side of the mesothoracic region, part; D–G images derived from RTI imaging, the circular legends in the lower-left corners depict the convex half sphere used to calibrate the RTI setup under the same conditions as the images; D normal map representation of the part; E relative heights representation of the part; F normal map representation of the counterpart. Abbreviations: G relative heights representation of the counterpart. ce, compound eye; elm, elytral margin; elc, elytral antero-proximal corner; leg1, foreleg; md, mandible; mxp, maxillary palp; pnlp, lateral process of the pronotum; ve, venter.
†Coleopsis archaica, holotype, ZfB 3315, drawings based on the photographs and the RTI images. A more complete side (part); B part and counterpart combined (counterpart mirrored); C counterpart. Abbreviations: A, Analis, anal vein; abd, abdomen; C, Costa; ce, compound eye; CuA, Cubitus anterior; cx1–3, coxa of thoracic segments 1–3; edt, elytral distal tip; elc, elytral antero-proximal corner; elf, elytral flange; elpm, elytral posterior margin; fr, frons; h, head; hw, hindwing; iv, intercalary veins; lbr, labrum; leg1, foreleg; md, mandible; mt, mentum; mx, maxilla; mxp, maxillary palp; pmt, prementum; pn, pronotum; pnlp, lateral process of the pronotum; R (+MA?), Radius, possibly conjoined with Media anterior; Sc, Subcosta; scs, scutellar shield; tr3, metatrochanter; ve, venter; wp, window punctures, exemplary, not limited to this area of the wing.
Body medium-sized (7.8 mm total length), slender. Head prognathous. Eyes strongly protruding laterally. Prothorax short. Pronotum more than three times as wide as its length along the midline, with anterolateral processes distinct, and lateral portions distinctly explanate with coarsely serrated margin. Procoxae small, rounded and medially separated. Dorsal surface of head and pronotum with fine tubercles. Scutellar shield triangular and large. Elytra reaching well beyond abdominal apex. Elytral shoulder region emarginated, with distinct concavity. Elytra with broad explanate lateral flanges. CuA oblique, from anterolateral region almost to the elytral tip; single anal vein (A) about 1/3 as long as the elytron. Window punctures visible between CuA and A. Mesocoxae ovoid and slightly oblique. Metathorax slightly longer than mesothorax.
This diagnosis is explicitly stated as a species-level diagnosis. Since †Coleopsis is monotypic, as are †Coleopseidae (and †Coleopseoidea Kirejthsuk and Nel 2016), the diagnosis should only be used to distinguish further specimens from †C. archaica. It should not be arbitrarily split up into parts which then could lead future authors to include additional species into the (presently) monotypic taxonomic category, without providing an apomorphy-based argumentation or a phylogenetic analysis.
The ‘peril of dating beetles’ has been pointed out by
†Coleopsis archaica has been described and illustrated in
We confirm an unusually short and transverse pronotum, as shown in
The illustrations in the original description (
We found the mesoscutellar shield (‘scutellum’) to be much larger than shown in the illustrations of
In contrast to the drawing accompanying the original description (
Whereas the position of †Coleopsis archaica in Coleoptera in the widest sense is beyond reasonable doubt, the old age together with its suggested basal position in the phylogenetic tree of beetles (
As pointed out above hardened protective forewings (elytra) are one of the most distinctive features of beetles and have likely played a crucial role in the earliest evolutionary history of the group. In the form in which they are present in extant beetles (epipleura, parallel stripes or smooth surface, various locking mechanisms, etc.), they contain an entire set of apomorphic character states (e.g.,
Apart from well-sclerotized elytra, albeit lacking infolded epipleura, the holotype of †Coleopsis archaica displays other morphological features that allow for a robust attribution to Coleoptera including the stem group. The lack of exposed membranes is a key innovation and autapomorphy of Coleoptera (e.g.,
A groundplan feature of Coleoptera in the widest sense is likely the presence of elytral window punctures (e.g.,
In extant beetles and stem group fossils with the notable exception of †Tshekardocoleidae (
The middle Permian †Permocupedidae are still somewhat ambiguous with respect to this feature (
Phylogenetic position of †Coleopsis archaica (red) based on apomorphies visible in the fossil re-described here. †Tshekardocoleidae is designated as potentially non-monophyletic, due to the absence of apomorphic characters. The clade Metacoleoptera (
Another obvious symplesiomorphy of †Coleopsis archaica and species of †Tshekardocoleidae is the elytral pattern. In very distinct contrast to a strictly parallel arrangement of longitudinal veins (or ridges) in groups of the Upper Permian (
A likely ground plan apomorphy of Coleoptera in the widest sense is the presence of a tuberculate surface of exposed sclerites, arguably linked with a preference for narrow spaces under bark (e.g.,
The species in the focus of this study, †Coleopsis archaica, has been assigned to the Lower Permian †Tshekardocoleidae based on the similarity to species attributed to this group (
Three of the studies that discuss the affinity of †C. archaica (
†Tshekardocoleidae is currently said to comprise 15 species, all of which are based on fossils from the Permian (
Considering the possibility that †Tshekardocoleidae is not a monophyletic group, careful comparisons of individual fossils are crucial to reveal relationships between species and genera, to be able to create a stable (apomorphy-based) taxonomy and to increase our understanding of the early evolution of beetles.
Few features of †Coleopsis archaica are potential autapomorphies. These include the exceptionally short and transverse pronotum and the presence of a fringe of setae or spines along the lateral elytral edge. However, the latter feature may arguably belong to the ground plan of Coleoptera in the widest sense, since more or less frayed or spinose pronotal or elytral fringes have also been described in different Cretaceous species of Ommatidae (e.g. Li et al. 2020).
Reflectance Transformation Imaging is widely used in cultural heritage research (e.g.
Schematic depiction of the RTI workflow used herein and the included hardware components (A–G). A Digital camera with a macro objective mounted on a vertical macro stand; B Half-spherical dome with power LEDs mounted with the light directed towards the centre of the dome; C XYZ-stage on which the fossil is placed; D Computer with Arduino integrated development environment (used for communication with the microcontroller and to trigger the camera shutter; E Relay board used to open and close specific parts of the circuit that powers the LEDs; F Arduino microcontroller used to control the relay board; G Memory card inserted into the camera used to save images and to transfer them to the computer; H–K Digital workflow used to create in-focus panoramic images; H Sorting the images from the camera into folders that each contain one RTI sequence (in our case 24 images corresponding to 24 illumination angles), in order to be automatically processed by the RTI software (relight); I–K Operations performed on normal maps, produced by the RTI software; I Normal maps with the same field of view but with different focal plane heights form ‘focus stacks’; J In-focus normal maps created by merging the images of each focus stack (extended depth of field); K Panoramic images created by stitching together images of the same objects with different fields of view. These can then be converted from normal maps to height maps.
The adoption of RTI in the field of paleoentomology is still very limited despite of its apparent potential. Several factors could have impeded a more widespread adoption. While hardware for constructing an RTI setup can be purchased for a modest price (ca. 120 € without shipping fees for our dome setup), the cost of a commercial prebuilt solution can be much higher (e.g. Bron Elektronik AG, https://broncolor.swiss/de/produkte/scope-d50, accessed April 11th 2022, ca. 23600 €) and the available setups might not be optimised for imaging very small objects. Even though constructing an RTI dome setup requires only beginner-level skills in electronics and microcontroller programming (
For processing our RTI data we used ‘relight’ (
Photographing very small details of fossils (e.g., insects) comes with two challenges. The small scale of the objects requires a high magnification, which in turn limits the area that can be recorded in a single image (narrow field of view). Further, the high magnification leads to a shallow depth of field. These challenges can be overcome by combining single images into a larger panoramic view by using ‘stitching’, and by combining the in-focus areas of multiple images of the same view to an overall in-focus image by using ‘extended depth of field’/’focus merging’. Naturally, these two challenging factors also apply to images taken with an RTI setup. Solutions to overcome the limitations of a narrow field of view by creating panoramic images (
As the surface shape was the centre of our interest, and for convenience, we did the focus merging and the panoramic stitching on the normal maps (surface topology). However, it should also be possible to apply these steps to image-based representations of colour and reflective properties. These can be generated with ‘relight’ (
Normal maps can not only be used as part of a relight-able RTI model, but also as a graphical representation of a fossil to aid the interpretation of surface details (e.g.,
While the depth maps used in this study show a good spatial resolution (Fig.
Photometric stereo (
The shortcomings of RTI can be overcome with the option of using normal maps as ‘working material’ to construct high resolution models by applying focus merging to increase the depth of field and to merge normal maps to larger panoramic normal maps (‘extended field of view’). This could facilitate a more widespread adoption in paleoentomology. Even though the technique is not new, interesting new features such as the radial basis function algorithm and improved methods to virtually relight surfaces (‘neural RTI’,
As already suggested by the exceptionally old age of the fossil, there is little doubt that †Coleopsis archaica belongs to the stem group of Coleoptera and is one of its earliest branches. Features shared with species of †Tshekardocoleidae are symplesiomorphies and therefore phylogenetically irrelevant. The retrieved data support that both taxa stand outside of a very large coleopteran subunit comprising the crown group and fossils of the late Permian, Mesozoic, and Cenozoic. A reliable documentation of structural features of fossils is essential for an adequate phylogenetic and taxonomic treatment, that should be exclusively based on apomorphies. RTI, recently still rarely used in paleoentomology, is a technique with a potential to enhance the morphological documentation and understanding of compression fossils.
We are very grateful to Edgar Müller (Geowissenschaftliche Sammlungen des Saarlandes) for loaning us the holotype. We also thank James H. Nebelsick (University of Tübingen) for providing access to the digital microscope, and also Oliver Betz (University of Tübingen) for supporting this project. Manfred Drack (University of Tübingen) is thanked for fruitful technical discussions and helpful comments on this manuscript. We thank the editor Martin Fikácek as well as two anonymous reviewers for their valuable suggestions. Thanks to the effort of numerous contributors, most of the digital work could be done using free and open source software.